Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G470500.1 | Wheat | cytosol | 86.86 | 86.5 |
| TraesCS3D01G107500.1 | Wheat | cytosol | 77.21 | 64.83 |
| Os01t0194300-01 | Rice | cytosol | 76.39 | 63.92 |
| EES00131 | Sorghum | cytosol | 74.33 | 62.09 |
| Zm00001d039469_P001 | Maize | cytosol | 73.1 | 61.06 |
| GSMUA_Achr2P16670_001 | Banana | cytosol | 60.99 | 50.86 |
| GSMUA_Achr7P09190_001 | Banana | cytosol | 58.93 | 49.91 |
| Solyc07g040690.2.1 | Tomato | cytosol | 56.88 | 48.09 |
| VIT_11s0016g01990.t01 | Wine grape | cytosol | 55.03 | 45.89 |
| GSMUA_Achr6P00950_001 | Banana | nucleus | 59.14 | 45.71 |
| KRH37416 | Soybean | cytosol | 54.0 | 45.19 |
| Bra027690.1-P | Field mustard | cytosol, plastid | 43.74 | 37.37 |
| CDY34413 | Canola | cytosol | 43.53 | 37.26 |
| CDY25575 | Canola | cytosol | 43.53 | 37.19 |
| Bra013950.1-P | Field mustard | cytosol | 42.3 | 35.58 |
| AT1G64280.1 | Thale cress | cytosol | 43.12 | 35.41 |
| CDY50004 | Canola | cytosol | 43.12 | 35.23 |
| Bra013952.1-P | Field mustard | cytosol | 42.71 | 34.38 |
| CDX94371 | Canola | cytosol | 42.71 | 34.38 |
| CDX89362 | Canola | cytosol | 42.3 | 34.05 |
| AT4G26120.2 | Thale cress | cytosol, plastid | 41.89 | 33.94 |
| CDX89364 | Canola | cytosol | 42.3 | 33.88 |
| CDX94376 | Canola | cytosol | 42.09 | 33.83 |
| TraesCS3D01G302900.1 | Wheat | cytosol, plastid | 39.22 | 31.47 |
| TraesCS4D01G017500.1 | Wheat | cytosol | 37.37 | 30.54 |
| CDY14314 | Canola | nucleus | 39.01 | 22.57 |
| Bra010439.1-P | Field mustard | cytosol | 42.09 | 21.31 |
| TraesCS3D01G484100.1 | Wheat | cytosol | 21.15 | 20.16 |
| TraesCS5D01G139600.1 | Wheat | cytosol | 20.33 | 20.08 |
Protein Annotations
| Gene3D:1.25.40.20 | MapMan:11.8.2.2 | MapMan:26.8.3.1.1 | Gene3D:3.30.710.10 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | InterPro:BTB/POZ_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000210 |
| InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:NPR1/NIM1-like_C | InterPro:NPR_central_dom | PFAM:PF00651 |
| PFAM:PF11900 | PFAM:PF12313 | PFscan:PS50097 | PFscan:PS50297 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF124 |
| InterPro:SKP1/BTB/POZ_sf | SMART:SM00248 | SUPFAM:SSF48403 | SUPFAM:SSF54695 | EnsemblPlantsGene:TraesCS7D01G019000 | EnsemblPlants:TraesCS7D01G019000.1 |
| TIGR:cd00204 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:8353564..8356531
Molecular Weight (calculated)
54494.0 Da
IEP (calculated)
6.207
GRAVY (calculated)
-0.154
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAYRSVLSV RSPFLDAIFA RRAAEGEGNP LDLRELLGEE VEVGYEALQL VLEYLYTGCI RDLPKSACVC ADVDGCAHVG CLPAISFMAQ VIFAASIFQV
101: AVLTNHFQRL LLDVLDDVEV DNLPLILSVA NLCNKSCMHL LERCLEMVVR SNLDMITLEK ALPSDIIEQI TDSRLSLGLV SPEDKGFPNK HVRRILRALD
201: SDDVCLVRML LKEGRTNLDG AFALHHAVEH CDSKVTMELL DIGLADVNHR NPRGYTVLHV AARRRDPKIL VSVLTKGARH SDLTFDGRKA VQISKRLTKH
301: GDYFGITEEG KPSREDRLCI KILEQAERRD PQLGEASVSL AIAGDRQRGK LLYLENRVAL MRIMFPTEAR IAMDIAQVDC TLKLTLDSGA KPPPEKELAT
401: IDLNETPFHM NEEHLARMST LSKTVELCKR FFPRCSNVID KIMDDEPELA PLQRDASTER TRRFGYLQDA VQKALSEDKA SFDKSGS
101: AVLTNHFQRL LLDVLDDVEV DNLPLILSVA NLCNKSCMHL LERCLEMVVR SNLDMITLEK ALPSDIIEQI TDSRLSLGLV SPEDKGFPNK HVRRILRALD
201: SDDVCLVRML LKEGRTNLDG AFALHHAVEH CDSKVTMELL DIGLADVNHR NPRGYTVLHV AARRRDPKIL VSVLTKGARH SDLTFDGRKA VQISKRLTKH
301: GDYFGITEEG KPSREDRLCI KILEQAERRD PQLGEASVSL AIAGDRQRGK LLYLENRVAL MRIMFPTEAR IAMDIAQVDC TLKLTLDSGA KPPPEKELAT
401: IDLNETPFHM NEEHLARMST LSKTVELCKR FFPRCSNVID KIMDDEPELA PLQRDASTER TRRFGYLQDA VQKALSEDKA SFDKSGS
001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR
Arabidopsis Description
NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.