Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G556600.1 | Wheat | nucleus | 96.94 | 94.71 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 92.24 | 93.56 |
| Zm00001d016312_P001 | Maize | cytosol | 15.76 | 72.04 |
| KXG27222 | Sorghum | nucleus | 65.88 | 68.63 |
| Os04t0637000-01 | Rice | nucleus | 62.35 | 66.75 |
| Zm00001d026398_P006 | Maize | nucleus | 62.82 | 64.81 |
| Zm00001d002143_P002 | Maize | cytosol | 61.18 | 59.23 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 49.65 | 57.81 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 45.65 | 55.59 |
| KRG97639 | Soybean | nucleus | 46.12 | 54.14 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 45.88 | 53.72 |
| KRH31239 | Soybean | nucleus | 45.88 | 53.57 |
| AT5G10030.3 | Thale cress | nucleus | 45.41 | 53.02 |
| Bra015646.1-P | Field mustard | nucleus | 41.88 | 52.51 |
| Bra024366.1-P | Field mustard | nucleus | 44.94 | 52.04 |
| CDY08810 | Canola | nucleus | 44.94 | 52.04 |
| CDX85782 | Canola | nucleus | 44.0 | 51.66 |
| Bra028604.1-P | Field mustard | nucleus | 44.0 | 51.66 |
| CDY40074 | Canola | nucleus | 43.76 | 51.38 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 51.06 | 51.3 |
| Solyc12g056860.1.1 | Tomato | nucleus | 41.88 | 51.15 |
| CDY33975 | Canola | nucleus | 44.47 | 51.08 |
| CDY37811 | Canola | nucleus | 44.47 | 51.08 |
| CDY14552 | Canola | nucleus | 44.0 | 50.95 |
| Bra031871.1-P | Field mustard | nucleus | 44.24 | 50.81 |
| Bra009063.1-P | Field mustard | nucleus | 43.29 | 50.55 |
| CDX69866 | Canola | nucleus | 43.29 | 50.55 |
| Solyc04g072460.2.1 | Tomato | nucleus | 42.59 | 50.14 |
| AT5G65210.2 | Thale cress | nucleus | 43.29 | 50.0 |
| PGSC0003DMT400070884 | Potato | nucleus | 42.35 | 49.86 |
| PGSC0003DMT400043651 | Potato | nucleus | 42.35 | 49.86 |
| AT1G77920.1 | Thale cress | nucleus | 43.06 | 49.73 |
| CDY21625 | Canola | nucleus | 42.35 | 49.45 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 38.35 | 49.1 |
| CDX68037 | Canola | nucleus | 42.82 | 49.06 |
| KRH63045 | Soybean | cytosol | 10.82 | 48.94 |
| Solyc04g011670.2.1 | Tomato | nucleus | 42.59 | 48.4 |
| KRH53141 | Soybean | nucleus | 40.24 | 48.17 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 37.88 | 48.06 |
| KRH43266 | Soybean | nucleus | 42.82 | 48.02 |
| Solyc04g054320.2.1 | Tomato | nucleus | 41.65 | 47.84 |
| KRH59415 | Soybean | nucleus | 41.65 | 47.84 |
| PGSC0003DMT400033308 | Potato | nucleus | 40.0 | 47.75 |
| AT1G22070.1 | Thale cress | nucleus | 43.06 | 47.66 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 37.41 | 47.32 |
| CDY18683 | Canola | cytosol | 41.41 | 47.31 |
| Bra016389.1-P | Field mustard | nucleus | 40.94 | 47.28 |
| CDY38253 | Canola | nucleus | 42.82 | 47.27 |
| CDY41495 | Canola | nucleus | 40.94 | 47.15 |
| Bra031364.1-P | Field mustard | nucleus | 41.88 | 47.09 |
| CDY38843 | Canola | nucleus | 40.94 | 47.03 |
| KRH64780 | Soybean | nucleus | 40.0 | 46.96 |
| CDX81273 | Canola | nucleus | 42.82 | 46.79 |
| KRH18838 | Soybean | nucleus | 39.06 | 44.86 |
| KRH16629 | Soybean | nucleus | 38.82 | 44.59 |
| Bra037809.1-P | Field mustard | nucleus | 40.24 | 43.62 |
| PGSC0003DMT400016235 | Potato | nucleus | 40.0 | 43.37 |
| CDY21336 | Canola | nucleus | 42.59 | 43.3 |
| CDX88399 | Canola | nucleus | 42.82 | 42.33 |
| CDX87494 | Canola | nucleus | 43.53 | 41.67 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 32.94 | 41.3 |
| Zm00001d041428_P001 | Maize | cytosol | 15.06 | 41.03 |
| Bra037374.1-P | Field mustard | nucleus | 26.59 | 35.99 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 40.24 | 35.85 |
| KRG92164 | Soybean | nucleus | 19.76 | 35.74 |
| TraesCS7D01G209800.1 | Wheat | nucleus | 37.65 | 35.71 |
| KRH34622 | Soybean | cytosol | 17.88 | 32.9 |
| TraesCS5D01G273500.1 | Wheat | nucleus | 36.0 | 29.54 |
| TraesCS6D01G154400.1 | Wheat | nucleus | 32.24 | 29.4 |
| TraesCS4D01G129900.1 | Wheat | nucleus | 36.47 | 28.81 |
| CDX79240 | Canola | nucleus | 37.41 | 27.89 |
| TraesCS5D01G178800.1 | Wheat | nucleus | 30.12 | 27.47 |
| TraesCS1D01G276100.2 | Wheat | nucleus | 33.65 | 27.19 |
| TraesCS3D01G365200.3 | Wheat | nucleus | 36.24 | 26.55 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | EnsemblPlantsGene:TraesCS2D01G529000 |
| EnsemblPlants:TraesCS2D01G529000.1 | InterPro:bZIP | TIGR:cd14708 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:-:616525015..616531466
Molecular Weight (calculated)
46846.5 Da
IEP (calculated)
6.197
GRAVY (calculated)
-0.507
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MELYPGYLED HFNIHKLSGT GGASPPEYMT SAAAAQYAPA PLRMAMYERA PPQQHQQQQP QLQPALGMWS SEPYKVDSGG QATSGSSIME PDAKFDHAGL
101: DEDPQMDELE TAGDADQGAS KPKEKVMRRL AQNREAARKS RLRKKAYIQQ LESSRIKLAQ LEQELQRTRQ QQGVYGGSNP GTSLQRHHGG GSAGHFGFAA
201: AGQMMDPGVA AFEIDYGRWV DEQKRHTEEL RNALQPGQAT SELELEVMVQ TGLANYDNLF QIKGAAAQAD VFCVMSGLWR SPAERFFLWI GGFRPSEVLK
301: ILSPQLEPMT DPQSVAVYAL QLTSAQAEDA LSQGMQKLQQ TLAESLTDPF AAPDAYMVGA VEKLKGLVGF VQQADHLRLE TLQNMHRILT TRQAAKGLLV
401: LGDYFQRLRA LSTLWAARPR ESAIS
101: DEDPQMDELE TAGDADQGAS KPKEKVMRRL AQNREAARKS RLRKKAYIQQ LESSRIKLAQ LEQELQRTRQ QQGVYGGSNP GTSLQRHHGG GSAGHFGFAA
201: AGQMMDPGVA AFEIDYGRWV DEQKRHTEEL RNALQPGQAT SELELEVMVQ TGLANYDNLF QIKGAAAQAD VFCVMSGLWR SPAERFFLWI GGFRPSEVLK
301: ILSPQLEPMT DPQSVAVYAL QLTSAQAEDA LSQGMQKLQQ TLAESLTDPF AAPDAYMVGA VEKLKGLVGF VQQADHLRLE TLQNMHRILT TRQAAKGLLV
401: LGDYFQRLRA LSTLWAARPR ESAIS
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.