Factsheet for Bra015646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000980.1-P
Bra027690.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77920.1	Bra027690.1-P	AT1G64280.1	10662863
AT1G77920.1	Bra027690.1-P	AT1G64280.1	15634206
AT1G77920.1	Bra000980.1-P	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G77920.1	Thale cress	nucleus	87.61	80.71
CDX87494	Canola	nucleus	99.41	75.9
Bra031364.1-P	Field mustard	nucleus	77.29	69.31
Bra016389.1-P	Field mustard	nucleus	74.04	68.21
VIT_18s0001g04470.t01	Wine grape	nucleus	67.85	63.36
GSMUA_Achr5P16630_001	Banana	nucleus	64.6	60.0
KRH63045	Soybean	cytosol	15.93	57.45
Solyc04g072460.2.1	Tomato	nucleus	60.77	57.06
PGSC0003DMT400070884	Potato	nucleus	60.77	57.06
GSMUA_AchrUn_...	Banana	nucleus	59.59	57.06
Solyc12g056860.1.1	Tomato	nucleus	58.41	56.9
PGSC0003DMT400043651	Potato	nucleus	60.47	56.79
Bra024366.1-P	Field mustard	nucleus	59.88	55.31
GSMUA_Achr10P...	Banana	nucleus	57.23	55.27
KRH53141	Soybean	nucleus	56.34	53.8
Bra031871.1-P	Field mustard	nucleus	58.7	53.78
Bra028604.1-P	Field mustard	nucleus	57.23	53.59
Bra034767.1-P	Field mustard	nucleus	51.92	53.17
Bra009241.1-P	Field mustard	nucleus	48.38	52.9
Bra028713.1-P	Field mustard	nucleus	50.74	52.76
KRH18838	Soybean	nucleus	57.23	52.43
Bra001443.1-P	Field mustard	nucleus	51.03	52.27
KRH16629	Soybean	nucleus	56.93	52.16
Bra038705.1-P	Field mustard	nucleus	51.33	52.1
Bra009063.1-P	Field mustard	nucleus	55.75	51.92
KRH64780	Soybean	nucleus	55.16	51.66
Zm00001d016312_P001	Maize	cytosol	14.16	51.61
Bra037809.1-P	Field mustard	nucleus	54.87	47.45
Os04t0637000-01	Rice	nucleus	54.87	46.85
KXG27222	Sorghum	nucleus	54.57	45.34
Zm00001d026398_P006	Maize	nucleus	52.51	43.2
TraesCS2A01G526300.1	Wheat	nucleus	52.8	42.72
Bra009233.1-P	Field mustard	cytosol	34.81	42.14
TraesCS2D01G529000.1	Wheat	nucleus	52.51	41.88
TraesCS2B01G556600.1	Wheat	nucleus	53.69	41.84
KXG38496	Sorghum	nucleus	36.87	40.19
Zm00001d024160_P003	Maize	nucleus	50.15	40.09
Bra037374.1-P	Field mustard	nucleus	36.58	39.49
Zm00001d002143_P002	Maize	cytosol	50.74	39.18
Bra004329.1-P	Field mustard	nucleus	48.67	37.41
Bra031622.1-P	Field mustard	nucleus	47.2	37.38
Zm00001d041428_P001	Maize	cytosol	16.52	35.9
Os08t0176900-01	Rice	nucleus	39.53	34.45
Bra018634.1-P	Field mustard	nucleus	48.08	34.32
OQU79985	Sorghum	golgi, vacuole	50.44	33.14
Bra005914.1-P	Field mustard	nucleus	42.18	32.95
HORVU2Hr1G116090.2	Barley	cytosol	34.81	27.9

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EnsemblPlantsGene:Bra015646	EnsemblPlants:Bra015646.1	EnsemblPlants:Bra015646.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:M4DGM1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0002541B71	InterPro:bZIP	:	:	:

Description

AT1G77920 (E=7e-132) | bZIP family transcription factor

Coordinates

chrA07:+:21568005..21569879

Molecular Weight (calculated)

38891.5 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.455

Length

339 amino acids

Sequence
(BLAST)

001: MMSSFSPTQL ASLRDMGIYE PFQQLVSWGN VYKSDINDHS PNTASSSVIQ VDARVDDHNN IVKMKRRLAQ NREAARKSRL RKKAYVQQLE ESRLKLSQLE
101: QELERAKQQG LRVSNSIPSG SITNTRIATF EMEHSHWLEE QSRRVSELRI ALQAHISDIE LRMLVESCLN HYANLFRMKS DAAKADVFYL ISGMWRTCTE
201: RFFQWIGGFR PSELLNVVMP YLQPLTDQQV LEVRNLQQSS QQAEDALSQG IEKLQQSLVE NIVVDAFSMD YPPQMAAALE NLQALEGFVN QADHLRQQTL
301: QQMAKILTTR QSARGLLALG EYLHRLRALS SLWAARPRD

Best Arabidopsis Sequence Match ( AT1G77920.1 )
(BLAST)

001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT

Arabidopsis Description

TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.