CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH37416
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	KRH37416	AT1G64280.1	10659709
AT1G22070.1	KRH37416	AT1G64280.1	10662863
AT1G22070.1	KRH37416	AT1G64280.1	15634206
AT1G22070.1	KRH37416	AT1G64280.1	21798944
AT1G22070.1	KRG94592	AT3G02000.1	19218396
AT1G22070.1	KRH01571	AT3G02000.1	19218396
AT1G22070.1	KRH06898	AT3G02000.1	19218396
AT1G22070.1	KRH70543	AT3G02000.1	19218396
AT1G77920.1	KRH37416	AT1G64280.1	10662863
AT1G77920.1	KRH37416	AT1G64280.1	15634206
AT1G77920.1	KRG94592	AT3G02000.1	19218396
AT1G77920.1	KRH01571	AT3G02000.1	19218396
AT1G77920.1	KRH06898	AT3G02000.1	19218396
AT1G77920.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16629	Soybean	nucleus	95.95	95.95
KRH63045	Soybean	cytosol	20.0	78.72
KRH53141	Soybean	nucleus	68.11	70.99
KRH64780	Soybean	nucleus	68.92	70.44
VIT_18s0001g04470.t01	Wine grape	nucleus	58.65	59.78
Solyc12g056860.1.1	Tomato	nucleus	54.59	58.05
PGSC0003DMT400070884	Potato	nucleus	56.49	57.89
Solyc04g072460.2.1	Tomato	nucleus	56.49	57.89
PGSC0003DMT400043651	Potato	nucleus	56.22	57.62
Bra015646.1-P	Field mustard	nucleus	52.43	57.23
CDX68037	Canola	nucleus	56.49	56.33
GSMUA_Achr5P16630_001	Banana	nucleus	55.41	56.16
AT1G77920.1	Thale cress	nucleus	55.68	55.98
KRG97639	Soybean	nucleus	52.7	53.87
Zm00001d016312_P001	Maize	cytosol	13.51	53.76
GSMUA_AchrUn_...	Banana	nucleus	51.35	53.67
GSMUA_Achr10P...	Banana	nucleus	50.54	53.28
KRH31239	Soybean	nucleus	52.16	53.02
Bra016389.1-P	Field mustard	nucleus	52.7	52.99
CDY38843	Canola	nucleus	52.97	52.97
Bra031364.1-P	Field mustard	nucleus	54.05	52.91
CDY41495	Canola	nucleus	52.7	52.85
AT1G22070.1	Thale cress	nucleus	53.78	51.82
CDY38253	Canola	nucleus	53.78	51.69
KRH59415	Soybean	nucleus	48.92	48.92
KRH36324	Soybean	nucleus	43.78	48.8
CDY21336	Canola	nucleus	54.05	47.85
KRH43266	Soybean	nucleus	48.92	47.76
CDX88399	Canola	nucleus	54.32	46.74
KRH66777	Soybean	nucleus	35.68	45.52
Os04t0637000-01	Rice	nucleus	48.65	45.34
CDX87494	Canola	nucleus	54.05	45.05
KXG27222	Sorghum	nucleus	47.84	43.38
Zm00001d026398_P006	Maize	nucleus	46.22	41.5
KXG38496	Sorghum	nucleus	34.59	41.16
TraesCS2A01G526300.1	Wheat	nucleus	44.59	39.38
TraesCS2D01G529000.1	Wheat	nucleus	44.86	39.06
TraesCS2B01G556600.1	Wheat	nucleus	45.41	38.62
KRG92164	Soybean	nucleus	24.32	38.3
Zm00001d024160_P003	Maize	nucleus	43.51	37.97
KRH34622	Soybean	cytosol	23.24	37.23
Zm00001d041428_P001	Maize	cytosol	15.68	37.18
KRG93068	Soybean	nucleus	44.59	37.16
Zm00001d002143_P002	Maize	cytosol	44.05	37.13
KRH20680	Soybean	nucleus	45.68	36.03
Os08t0176900-01	Rice	nucleus	37.03	35.22
KRH35977	Soybean	nucleus	42.97	34.87
KRG95103	Soybean	nucleus	43.24	34.86
KRH66771	Soybean	nucleus	42.7	34.35
KRG90784	Soybean	nucleus	41.89	34.07
KRH70569	Soybean	nucleus	42.16	33.4
KRH75411	Soybean	nucleus	43.78	33.33
KRH13334	Soybean	nucleus	44.59	33.2
KRH21813	Soybean	nucleus	14.32	32.92
CDX79240	Canola	nucleus	50.54	32.81
OQU79985	Sorghum	golgi, vacuole	45.68	32.75
KRH71904	Soybean	nucleus	42.16	32.23
KRG95350	Soybean	nucleus	42.7	32.18
KRH67029	Soybean	nucleus	42.7	32.18
KRH22685	Soybean	nucleus	41.62	31.43
KRH30432	Soybean	nucleus	41.62	31.24
KRH26635	Soybean	nucleus	40.81	30.94
KRH25227	Soybean	nucleus	40.27	29.74
KRH32997	Soybean	nucleus	41.08	29.4
KRH39187	Soybean	cytosol, extracellular, nucleus	14.05	29.21
HORVU2Hr1G116090.2	Barley	cytosol	29.73	26.0

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100526976	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:ACUP02008138	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G085100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7LX18	ProteinID:KRH18832.1
ProteinID:KRH18833.1	ProteinID:KRH18834.1	ProteinID:KRH18835.1	ProteinID:KRH18836.1	ProteinID:KRH18837.1	EnsemblPlants:KRH18838
ProteinID:KRH18838	ProteinID:KRH18838.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI00029593B1	InterPro:bZIP	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:19659235..19664811

Molecular Weight (calculated)

41918.2 Da

IEP (calculated)

7.636

GRAVY (calculated)

-0.461

Length

370 amino acids

Sequence
(BLAST)

001: MNSSSTQLVL TKRMGIYDPF HQVNMWGDSF KIDGSLNSIA PQMLMIKPSM QNKSECTPHE SREPSGDDQE TNEKADTKAL RRQAQNREAA RKCRLRKKAY
101: VQQLETSRVK LMQLELEIEK ARKQQGMYIR SALDVSYMGS SGTINPGITL FELEYAQWIE EQDRQNQELR NTLQTQASEM QLHLLVESCL SHYSNLFRMK
201: AEAAKADVFY LISGAWKASV ERLFLWIGGS RPSQLLNIIA PQLEPLTDQQ IVSINNLRLS SQQAEDALSL GLDKLQQSLV HNIPSDPLAV GHYGFEIAAA
301: MEKGEALERF VNQADHLRQQ TLIHMSRILT TAQAAKGLLA MGEYFHRLRT LSSLWTARSC DPSFPTQLSN

Best Arabidopsis Sequence Match ( AT1G77920.1 )
(BLAST)

001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT

Arabidopsis Description

TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.