CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	KRG94592	AT3G02000.1	19218396
AT1G68640.1	KRH01571	AT3G02000.1	19218396
AT1G68640.1	KRH06898	AT3G02000.1	19218396
AT1G68640.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35977	Soybean	nucleus	92.53	92.32
VIT_01s0011g03230.t01	Wine grape	nucleus	69.67	69.98
KRH36324	Soybean	nucleus	50.11	68.67
KRH70569	Soybean	nucleus	67.25	65.52
KRH75411	Soybean	nucleus	68.13	63.79
Os10t0566200-00	Rice	extracellular	16.48	63.56
Solyc05g009660.2.1	Tomato	nucleus	65.93	61.98
PGSC0003DMT400033741	Potato	nucleus	65.27	61.49
GSMUA_Achr9P15550_001	Banana	nucleus	57.36	60.84
Os06t0265400-01	Rice	nucleus	51.21	60.52
Bra004329.1-P	Field mustard	nucleus	57.14	58.96
CDX95999	Canola	nucleus	57.14	58.82
CDY38608	Canola	nucleus	57.14	58.82
AT1G68640.1	Thale cress	nucleus	57.8	58.19
KRH66777	Soybean	nucleus	36.92	57.93
HORVU7Hr1G042180.5	Barley	nucleus	46.37	55.97
KRG93068	Soybean	nucleus	54.29	55.63
KRG95103	Soybean	nucleus	54.73	54.25
KRH66771	Soybean	nucleus	54.51	53.91
TraesCS7A01G207100.1	Wheat	nucleus	51.87	53.27
TraesCS7D01G209800.1	Wheat	nucleus	52.09	52.9
KRH20680	Soybean	nucleus	54.51	52.88
TraesCS7B01G114300.1	Wheat	nucleus	51.65	52.46
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	38.68	51.92
Os01t0882200-00	Rice	cytosol, extracellular	16.04	51.41
Zm00001d037317_P003	Maize	nucleus	48.13	50.69
KRG97639	Soybean	nucleus	39.12	49.17
KRH13334	Soybean	nucleus	53.63	49.09
KRH63045	Soybean	cytosol	10.11	48.94
KRH31239	Soybean	nucleus	38.68	48.35
OQU76203	Sorghum	nucleus	49.01	48.27
KRH59415	Soybean	nucleus	36.04	44.32
KRH53141	Soybean	nucleus	33.85	43.38
KRH43266	Soybean	nucleus	35.82	43.01
KRH16629	Soybean	nucleus	34.07	41.89
KRH18838	Soybean	nucleus	34.07	41.89
KRG92164	Soybean	nucleus	21.54	41.7
KRH64780	Soybean	nucleus	32.75	41.16
KRH21813	Soybean	nucleus	14.51	40.99
KRH67029	Soybean	nucleus	43.52	40.33
KRG95350	Soybean	nucleus	43.3	40.12
KRH34622	Soybean	cytosol	20.22	39.83
KRH71904	Soybean	nucleus	41.76	39.26
KRH32997	Soybean	nucleus	41.54	36.56
KRH26635	Soybean	nucleus	39.12	36.48
KRH22685	Soybean	nucleus	38.9	36.12
KRH39187	Soybean	cytosol, extracellular, nucleus	14.07	35.96
KRH30432	Soybean	nucleus	38.02	35.09
KRH25227	Soybean	nucleus	38.46	34.93

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100775280	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EMBL:ACUP02012641
ncoils:Coil	EnsemblPlantsGene:GLYMA_20G113600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7N2V3
EnsemblPlants:KRG90784	ProteinID:KRG90784	ProteinID:KRG90784.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI000294F46A	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:35556507..35561209

Molecular Weight (calculated)

50674.6 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.447

Length

455 amino acids

Sequence
(BLAST)

001: MQSFNTTTES ESISPLYCHS PFFHRGNDTS RNPSRFSDLQ HSFRQHDAVD LSSSSVFGGK SSNVAVVASN LQCGTFNTNL GCAEFGSTEQ GPMFQRGTTV
101: SMATGNQHVE NWADDSHPTE DTCTDIDTDD KNQCFSTVSW CHGVGDGALV VVDSHDQSKT KVKAEDQKTV RRLAQNREAA KKSRLRKKAY VQQLENSRVR
201: LAQLEQELQR ARQQGAFIAT GIPGDRGHSS VANGALAFDM DYARWVDEHQ RLIIDIRSAI NSQMGENELH LLVDGAMAHY DELFRLKSIG AKVDVFHILS
301: GMWKTPAERC FIWLGGFRSS ELLKIVRNQL EPLTEQQLMG IYNLQQSSQQ AEDALSQGME ALQQSLSETL SSSSLGPSGS ENVAEYMGQM AIALGKLATL
401: ENFLHQADLL RQQTLQQMRR ILTTCQAARA LLVINDYVTR LRALNSLWLA CPREY

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.