Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38608 | Canola | nucleus | 89.16 | 91.18 |
| CDX95999 | Canola | nucleus | 88.72 | 90.72 |
| Bra004329.1-P | Field mustard | nucleus | 88.5 | 90.7 |
| AT5G06950.5 | Thale cress | nucleus | 47.79 | 65.45 |
| Os10t0566200-00 | Rice | extracellular | 16.59 | 63.56 |
| VIT_01s0011g03230.t01 | Wine grape | nucleus | 63.27 | 63.13 |
| AT5G06960.1 | Thale cress | nucleus | 45.8 | 62.73 |
| AT3G12250.4 | Thale cress | nucleus | 47.57 | 60.56 |
| Os06t0265400-01 | Rice | nucleus | 50.88 | 59.74 |
| KRH35977 | Soybean | nucleus | 59.07 | 58.55 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 55.53 | 58.51 |
| Solyc05g009660.2.1 | Tomato | nucleus | 61.95 | 57.85 |
| KRG90784 | Soybean | nucleus | 58.19 | 57.8 |
| PGSC0003DMT400033741 | Potato | nucleus | 61.28 | 57.35 |
| KRH70569 | Soybean | nucleus | 58.85 | 56.96 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 46.68 | 55.97 |
| KRH75411 | Soybean | nucleus | 59.29 | 55.14 |
| Os01t0882200-00 | Rice | cytosol, extracellular | 17.04 | 54.23 |
| TraesCS7A01G207100.1 | Wheat | nucleus | 51.11 | 52.14 |
| TraesCS7D01G209800.1 | Wheat | nucleus | 51.11 | 51.56 |
| TraesCS7B01G114300.1 | Wheat | nucleus | 50.88 | 51.34 |
| Zm00001d037317_P003 | Maize | nucleus | 47.79 | 50.0 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 37.17 | 49.56 |
| AT5G10030.3 | Thale cress | nucleus | 38.27 | 47.53 |
| OQU76203 | Sorghum | nucleus | 48.45 | 47.4 |
| AT1G77920.1 | Thale cress | nucleus | 36.95 | 45.38 |
| AT5G65210.2 | Thale cress | nucleus | 36.73 | 45.11 |
| AT1G22070.1 | Thale cress | nucleus | 37.17 | 43.75 |
| AT1G08320.4 | Thale cress | nucleus | 40.49 | 38.05 |
| AT5G06839.3 | Thale cress | nucleus | 38.05 | 37.39 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | EntrezGene:843194 | ProteinID:AAD19660.1 |
| ProteinID:AAD49979.1 | ProteinID:AEE34822.1 | EMBL:AK118286 | ArrayExpress:AT1G68640 | EnsemblPlantsGene:AT1G68640 | RefSeq:AT1G68640 |
| TAIR:AT1G68640 | RefSeq:AT1G68640-TAIR-G | EnsemblPlants:AT1G68640.1 | TAIR:AT1G68640.1 | Unigene:At.35500 | EMBL:BT008586 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR004827 | InterPro:IPR025422 | RefSeq:NP_177031.1 | Symbol:PAN | PFAM:PF00170 | PFAM:PF14144 |
| PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0006081 | PO:PO:0007611 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009049 |
| PO:PO:0020003 | PO:PO:0020130 | PO:PO:0020149 | PO:PO:0025022 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF372 | UniProt:Q9SX27 | SMART:SM00338 | SUPFAM:SSF57959 |
| InterPro:TGA_domain | UniParc:UPI00000ABF09 | InterPro:bZIP | SEG:seg | : | : |
Description
PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
Coordinates
chr1:-:25769576..25772650
Molecular Weight (calculated)
50460.5 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.486
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.