CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05136
EES10652

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	EES05136	AT3G02000.1	19218396
AT1G68640.1	EES10652	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037317_P003	Maize	nucleus	83.55	89.35
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	56.49	76.99
Os10t0566200-00	Rice	extracellular	17.1	66.95
Os06t0265400-01	Rice	nucleus	54.11	64.94
HORVU7Hr1G042180.5	Barley	nucleus	51.73	63.4
EES02530	Sorghum	nucleus	44.81	62.73
TraesCS7D01G209800.1	Wheat	nucleus	57.79	59.6
TraesCS7A01G207100.1	Wheat	nucleus	57.14	59.59
KXG39494	Sorghum	nucleus	43.07	59.4
TraesCS7B01G114300.1	Wheat	nucleus	57.58	59.38
KXG36997	Sorghum	nucleus	42.21	58.56
GSMUA_Achr9P15550_001	Banana	nucleus	53.03	57.11
KXG22247	Sorghum	nucleus	40.04	55.72
Os01t0882200-00	Rice	cytosol, extracellular	16.88	54.93
VIT_01s0011g03230.t01	Wine grape	nucleus	51.52	52.54
EES03778	Sorghum	nucleus	50.43	49.79
Solyc05g009660.2.1	Tomato	nucleus	51.52	49.17
KRG90784	Soybean	nucleus	48.27	49.01
KRH35977	Soybean	nucleus	48.05	48.68
AT1G68640.1	Thale cress	nucleus	47.4	48.45
Bra004329.1-P	Field mustard	nucleus	46.1	48.3
PGSC0003DMT400033741	Potato	nucleus	50.43	48.24
CDX95999	Canola	nucleus	46.1	48.19
CDY38608	Canola	nucleus	46.1	48.19
KRH70569	Soybean	nucleus	45.45	44.97
KRH75411	Soybean	nucleus	47.19	44.86
KXG20382	Sorghum	cytosol	13.64	39.87
KXG27222	Sorghum	nucleus	35.06	39.71
KXG38496	Sorghum	nucleus	25.76	38.26
OQU89155	Sorghum	nucleus	35.06	38.12
KXG22976	Sorghum	nucleus	36.8	35.2
OQU82891	Sorghum	nucleus	37.01	35.04
KXG35912	Sorghum	nucleus	36.58	33.8
KXG33735	Sorghum	nucleus	38.1	33.02
OQU78097	Sorghum	nucleus	35.71	31.61
OQU79985	Sorghum	golgi, vacuole	35.06	31.4
KXG29702	Sorghum	nucleus	33.12	31.35
OQU76708	Sorghum	nucleus	19.7	29.26

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1W0VSD7	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:OQU76203
ProteinID:OQU76203	ProteinID:OQU76203.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF371	SMART:SM00338	EnsemblPlantsGene:SORBI_3010G110100	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0009DC8E2A	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:11004657..11007667

Molecular Weight (calculated)

50096.5 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.210

Length

462 amino acids

Sequence
(BLAST)

001: MHPHQPSHAF SYWVEQGAGG GYRHVGDGAT ILLPELQRSP NPSSKSSSSL SAAATFAPPL AAAAALSLSL FVCLMQHGGV AAVPFGMVPP GVATADDARF
101: CMPWATPAHF ENWGDSGIVV TSPLAETAST DVDDVSGGNH HHDAHMGVAI TRSVDGHENS LPVCKVESRD HKAQRRLAQN REAARKSRMR KKAYIVELEN
201: SRSKLAQLEQ ELQRARQQGM FIASGRSGDH GGSTGGALAF DLEYARWLDE HQHHMNDLRV ALSAQIGDDD LGVLVDGVML HYDEMFRLKG VATRTDVFHV
301: LSGMWMSPAE RFFMWLGGFR SSELLKVVAR QVEPQLTEQQ LVGICSLQQS LQQAEDALSQ GMEALQQGLG DTLAAAAPAA PGPSASAADS VTNYMGQMAV
401: AMSKLATVEN FLRQADLLRQ QTLKQVHRIL TTRQAARALL VVSDYFSRLR ALSSLWLTRP TD

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.