CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015845_P001	Maize	cytosol	48.16	87.36
Zm00001d015846_P001	Maize	nucleus	28.48	68.81
TraesCS6B01G193200.2	Wheat	nucleus	61.89	65.94
HORVU0Hr1G015710.1	Barley	nucleus	61.89	65.65
TraesCS6D01G154400.1	Wheat	nucleus	61.48	64.38
TraesCS6A01G165800.1	Wheat	nucleus	61.07	63.95
Os02t0194900-00	Rice	nucleus	40.78	53.35
OQU76708	Sorghum	nucleus	31.15	48.87
OQU89155	Sorghum	nucleus	42.21	48.47
KXG20382	Sorghum	cytosol	14.96	46.2
EES02530	Sorghum	nucleus	30.94	45.76
KXG36997	Sorghum	nucleus	29.92	43.84
KXG39494	Sorghum	nucleus	29.92	43.58
KXG22247	Sorghum	nucleus	29.1	42.77
KXG35912	Sorghum	nucleus	42.01	41.0
KXG38496	Sorghum	nucleus	23.98	37.62
EES03778	Sorghum	nucleus	34.63	36.11
KXG22976	Sorghum	nucleus	34.22	34.58
OQU82891	Sorghum	nucleus	34.43	34.43
KXG27222	Sorghum	nucleus	28.07	33.58
KXG33735	Sorghum	nucleus	36.27	33.21
OQU76203	Sorghum	nucleus	31.35	33.12
OQU78097	Sorghum	nucleus	34.63	32.38
OQU79985	Sorghum	golgi, vacuole	30.94	29.26

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A194YNC1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:KXG29702	ProteinID:KXG29702	ProteinID:KXG29702.1	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF370
SMART:SM00338	EnsemblPlantsGene:SORBI_3004G078800	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0007F2797F	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6496341..6505629

Molecular Weight (calculated)

52356.6 Da

IEP (calculated)

8.714

GRAVY (calculated)

-0.464

Length

488 amino acids

Sequence
(BLAST)

001: MGDRTWQQPH EQPQAYPDAG TMVQASSSSV HGSIIRKEPG GGYDMAEFDQ ALFLYLNSQD QASVIQDQPQ TLNIFPSQPM HVVEPAPKGG SMGTNNTASN
101: AAAVAGSSSK QQQQPPPPPP PPNKDGGKPA AVKREGSGGG AAMGSGTPST SNNRQEGRPR TSDAKTLRRL AQNREAARKS RLRKKAYIQN LETSRIRLTQ
201: LEQDLHYRSR TQGAVFGGGA LSGCSGGLSP EAAWFDMEHA RWQEEHGKMM RHLRAALEAE HAASAASTST AAEAQLLRQL VDAAAAHHGV LAELKAVAAR
301: ADAFHLVSGA WASAAERCFL WIGGFRPSEL IKIAARHAEP LTEQQAMGVC GVQQWARDAE AALDHELQAM HRSVSEAVSS DAAALLCPYS DVPGFMATMS
401: LAISKLASLE AFVRQADALR LQALHRLPQI LTARQSARCF LAIADYSHRL RALSELWHTR PGQDPAASNL AAGPSSQRPP YQSRDGLL

Best Arabidopsis Sequence Match ( AT5G06839.1 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNKEGN
101: RKGLASSDHD IPKSSDPKTL RRLAQNREAA RKSRLRKKAY VQQLESCRIK LTQLEQEIQR ARSQGVFFGG SLIGGDQQQG GLPIGPGNIS SEAAVFDMEY
201: ARWLEEQQRL LNELRVATQE HLSENELRMF VDTCLAHYDH LINLKAMVAK TDVFHLISGA WKTPAERCFL WMGGFRPSEI IKVIVNQIEP LTEQQIVGIC
301: GLQQSTQEAE EALSQGLEAL NQSLSDSIVS DSLPPASAPL PPHLSNFMSH MSLALNKLSA LEGFVLQADN LRHQTIHRLN QLLTTRQEAR CLLAVAEYFH
401: RLQALSSLWL ARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.