CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00131
EES02530
EES03778
EES05136
EES09234
EES10652
EES16520
KXG22247
KXG36997
KXG39494
OQU88196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	EES00131	AT1G64280.1	10659709
AT5G06960.1	EES00131	AT1G64280.1	10662863
AT5G06960.1	EES00131	AT1G64280.1	12383081
AT5G06960.1	EES00131	AT1G64280.1	15634206
AT5G06960.1	EES09234	AT2G41370.1	21798944
AT5G06960.1	EES16520	AT2G41370.1	21798944
AT5G06960.1	OQU88196	AT2G41370.1	21798944
AT5G06960.1	EES05136	AT3G02000.1	19218396
AT5G06960.1	EES10652	AT3G02000.1	19218396
AT5G06960.1	EES02530	AT5G06960.1	17098811
AT5G06960.1	EES03778	AT5G06960.1	17098811
AT5G06960.1	KXG22247	AT5G06960.1	17098811
AT5G06960.1	KXG36997	AT5G06960.1	17098811
AT5G06960.1	KXG39494	AT5G06960.1	17098811
AT5G06960.1	EES02530	AT5G06960.1	21798944
AT5G06960.1	EES03778	AT5G06960.1	21798944
AT5G06960.1	KXG22247	AT5G06960.1	21798944
AT5G06960.1	KXG36997	AT5G06960.1	21798944
AT5G06960.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043153_P001	Maize	nucleus	82.27	91.23
Zm00001d012553_P003	Maize	nucleus	86.97	86.6
TraesCS3A01G334100.1	Wheat	nucleus	84.4	83.16
HORVU3Hr1G079010.5	Barley	nucleus	84.62	83.02
TraesCS3B01G365100.1	Wheat	nucleus	84.4	82.81
TraesCS3D01G327600.1	Wheat	nucleus	84.19	82.6
EES02530	Sorghum	nucleus	57.91	82.12
Solyc11g064950.1.1	Tomato	nucleus	56.84	82.1
PGSC0003DMT400024428	Potato	nucleus	56.84	82.1
KRH36324	Soybean	nucleus	57.05	80.42
KXG36997	Sorghum	nucleus	56.62	79.58
KXG39494	Sorghum	nucleus	56.62	79.1
Solyc01g008730.2.1	Tomato	nucleus	54.91	78.59
AT5G06950.5	Thale cress	nucleus	55.13	78.18
Bra009241.1-P	Field mustard	nucleus	51.28	77.42
CDY08443	Canola	nucleus	54.7	77.34
Bra034767.1-P	Field mustard	nucleus	54.49	77.04
CDX70053	Canola	nucleus	52.99	75.84
CDX98971	Canola	nucleus	52.99	75.61
Os01t0808100-01	Rice	nucleus	58.33	75.0
CDY00762	Canola	nucleus	52.99	74.92
CDX73830	Canola	nucleus	52.99	74.92
Bra001443.1-P	Field mustard	nucleus	52.99	74.92
Bra038705.1-P	Field mustard	nucleus	53.42	74.85
CDY50562	Canola	nucleus	53.42	74.85
CDY52616	Canola	nucleus	53.21	74.77
PGSC0003DMT400026710	Potato	mitochondrion	27.78	73.86
KXG22247	Sorghum	nucleus	52.35	73.8
AT5G06960.1	Thale cress	nucleus	51.71	73.33
CDY05010	Canola	nucleus	50.21	72.09
Bra028713.1-P	Field mustard	nucleus	50.0	71.78
CDY14061	Canola	nucleus	50.0	71.78
VIT_08s0007g05170.t01	Wine grape	nucleus	68.59	71.18
AT3G12250.4	Thale cress	nucleus	53.85	70.99
KRH66777	Soybean	nucleus	43.38	70.0
VIT_13s0084g00660.t01	Wine grape	nucleus	70.09	69.94
KRG93068	Soybean	nucleus	65.38	68.92
KRG95103	Soybean	nucleus	66.03	67.32
CDY42138	Canola	nucleus	46.58	67.28
PGSC0003DMT400060926	Potato	nucleus	61.97	66.97
KRH66771	Soybean	nucleus	65.81	66.96
KRH20680	Soybean	nucleus	65.81	65.67
Solyc10g080770.1.1	Tomato	nucleus	62.61	65.11
Solyc10g080780.1.1	Tomato	cytosol	37.18	64.68
PGSC0003DMT400060922	Potato	nucleus	36.75	64.18
KRH13334	Soybean	nucleus	64.32	60.56
OQU76203	Sorghum	nucleus	49.79	50.43
KXG27222	Sorghum	nucleus	38.46	44.12
KXG22976	Sorghum	nucleus	43.16	41.82
OQU82891	Sorghum	nucleus	43.38	41.6
KXG38496	Sorghum	nucleus	26.92	40.51
OQU89155	Sorghum	nucleus	36.32	40.0
KXG35912	Sorghum	nucleus	41.88	39.2
KXG20382	Sorghum	cytosol	13.03	38.61
OQU76708	Sorghum	nucleus	24.79	37.3
KXG33735	Sorghum	nucleus	41.45	36.4
OQU78097	Sorghum	nucleus	38.89	34.87
KXG29702	Sorghum	nucleus	36.11	34.63
OQU79985	Sorghum	golgi, vacuole	37.39	33.91

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:8055267	UniProt:C5XMK2
ncoils:Coil	ProteinID:EES01626.2	EnsemblPlants:EES03778	ProteinID:EES03778	ProteinID:EES03778.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004683	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738
GO:GO:0009931	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0035556	GO:GO:0043565	GO:GO:0046777	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF255
SMART:SM00338	EnsemblPlantsGene:SORBI_3003G329500	SUPFAM:SSF57959	unigene:Sbi.9315	InterPro:TGA_domain	UniParc:UPI0001A85788
RefSeq:XP_002458658.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:65465408..65471285

Molecular Weight (calculated)

51133.4 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.498

Length

468 amino acids

Sequence
(BLAST)

001: MESRRGGSTA AAEDAGGGMP SFGPPQHAIH TDVNSMQPSR VTDFGALAQS AGFRIEDLAN LNANALFNLK PNTHTINNSP LQFGSYGKPI SPHINTIEAA
101: TAKTRIDPQL LEQQTGAQSN LVALPTGNIE NWGESAMAGG SPMTDTSSDP DTDERNQMFE QGLVTVPTAS DSSDKSRDKL DQKTLRRLAQ NREAARKSRL
201: RKKAYIQNLE SSRLKLTQLE QELQRARQQG IFISTSGDQP QSTSGNGALA FDMEYARWLE EHNKHVNELR AAVNAHAGDN DLRGIVDSIM AHYDEIFRLK
301: GVAAKADVFH VLSGMWKTPA ERCFMWLGGF RSSELLKLLA GHLEPLTDQQ LVGISNLQQS SQQAEDALSQ GMEALQQSLA ETLASGSLGP AGPSGNVANY
401: MGQMAMAMGK LGTLENFLRQ ADNLRLQTLQ QMQRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.