CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005143_P001	Maize	nucleus	87.06	90.02
Os09t0280500-01	Rice	nucleus	70.35	64.03
TraesCS5A01G174200.1	Wheat	nucleus	68.24	62.1
TraesCS5D01G178800.1	Wheat	nucleus	67.76	61.8
HORVU5Hr1G053330.5	Barley	nucleus	66.82	56.35
EES02530	Sorghum	nucleus	37.65	48.48
KXG36997	Sorghum	nucleus	37.65	48.05
KXG39494	Sorghum	nucleus	37.41	47.46
KXG35912	Sorghum	nucleus	52.71	44.8
KXG22247	Sorghum	nucleus	34.59	44.28
OQU76708	Sorghum	nucleus	32.0	43.73
KXG29702	Sorghum	nucleus	48.47	42.21
KXG20382	Sorghum	cytosol	14.35	38.61
EES03778	Sorghum	nucleus	40.0	36.32
KXG38496	Sorghum	nucleus	26.35	36.01
OQU82891	Sorghum	nucleus	40.71	35.45
OQU76203	Sorghum	nucleus	38.12	35.06
KXG22976	Sorghum	nucleus	39.53	34.78
KXG27222	Sorghum	nucleus	32.94	34.31
KXG33735	Sorghum	nucleus	38.82	30.96
OQU78097	Sorghum	nucleus	37.18	30.27
OQU79985	Sorghum	golgi, vacuole	34.35	28.29

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EntrezGene:8063472	UniProt:A0A1W0W497	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:OQU89155	ProteinID:OQU89155	ProteinID:OQU89155.1
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF179	SMART:SM00338	EnsemblPlantsGene:SORBI_3002G153100	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001A8378D
RefSeq:XP_002459956.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:45762133..45770208

Molecular Weight (calculated)

46937.3 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.361

Length

425 amino acids

Sequence
(BLAST)

001: MMAASSTMSK ESASYDMAEF DQSAIFLYLE DGHDQEQQRQ TLNIFPSQPM HVAEPIPAKG VSMGMVTASM LPNGNSSSPK RQEQGGQHRS VAAPAGPVVP
101: LPSNNLAKDN RNSLTKKEET SGGKGAASAG IVQERVKDPK TLRRLAQNRE AARKSRLRKK AYIQQLETSR IRLSQLEQQV QVARVQGVFL GTGEQPGFSS
201: APSPAAVFDV EYGRWVEEHS KLMFQLRAAL SEHLADEQLQ SFVNGGMAQH EELLNLKGAM ARADVFHLLS GVWVSPAERC FLWLGGFRPS EVIKVMLKHV
301: EPLSEGQILG IYQLQQLVQE REEALNHSME ATQQNISDIV AAPDVAPATF MGHMSLAMNK VAAMESFVMQ ADGLRQQTLH KLHHILTTRQ AARCLLAIAD
401: YFHRLRALST LWVARPRQDD GPGLQ

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.