CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0614100-01	Rice	nucleus	68.81	47.45
OQU89155	Sorghum	nucleus	43.73	32.0
KXG29702	Sorghum	nucleus	48.87	31.15
KXG38496	Sorghum	nucleus	29.9	29.9
KXG36997	Sorghum	nucleus	31.19	29.13
EES02530	Sorghum	nucleus	30.87	29.09
KXG39494	Sorghum	nucleus	30.55	28.36
KXG35912	Sorghum	nucleus	43.41	27.0
KXG22247	Sorghum	nucleus	27.65	25.9
EES03778	Sorghum	nucleus	37.3	24.79
KXG22976	Sorghum	nucleus	35.05	22.57
OQU82891	Sorghum	nucleus	34.73	22.13
KXG27222	Sorghum	nucleus	28.94	22.06
KXG33735	Sorghum	nucleus	36.66	21.39
OQU78097	Sorghum	nucleus	35.05	20.88
OQU76203	Sorghum	nucleus	29.26	19.7
OQU79985	Sorghum	golgi, vacuole	30.87	18.6
KXG20382	Sorghum	cytosol	3.22	6.33

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1W0VTU9	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:OQU76708	ProteinID:OQU76708	ProteinID:OQU76708.1	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241
SMART:SM00338	EnsemblPlantsGene:SORBI_3010G192432	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0009DC8AD2	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:53454267..53458180

Molecular Weight (calculated)

33415.8 Da

IEP (calculated)

10.082

GRAVY (calculated)

-0.478

Length

311 amino acids

Sequence
(BLAST)

001: MAYPSTSGMV QASSSLHGSM RRDPEGYDMS SDLDQALLLY FDGQQAKTSI QEQQPQTLNI FPSQPMHHIE PSPKGSMASS SVVAAQVAAA PSKNSQAPSL
101: MGGGGPLAAA GKSSKAAIKR EGGTAGGKHG AVGASSSDQE GPRTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLESGRIR LAQLEQEMQM ARTHQGALWG
201: AGTLSPDAAL FNLEYERWLG EHSKVVARLR AAAEEHHRPD GELRAYVDEA AAHYGALMGH KARVAGADPL HLLSGLWKGA AERCFLWIGG FRPSELVKVP
301: TSTTLKFIIC R

Best Arabidopsis Sequence Match ( AT5G06839.1 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNKEGN
101: RKGLASSDHD IPKSSDPKTL RRLAQNREAA RKSRLRKKAY VQQLESCRIK LTQLEQEIQR ARSQGVFFGG SLIGGDQQQG GLPIGPGNIS SEAAVFDMEY
201: ARWLEEQQRL LNELRVATQE HLSENELRMF VDTCLAHYDH LINLKAMVAK TDVFHLISGA WKTPAERCFL WMGGFRPSEI IKVIVNQIEP LTEQQIVGIC
301: GLQQSTQEAE EALSQGLEAL NQSLSDSIVS DSLPPASAPL PPHLSNFMSH MSLALNKLSA LEGFVLQADN LRHQTIHRLN QLLTTRQEAR CLLAVAEYFH
401: RLQALSSLWL ARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.