CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82891	Sorghum	nucleus	88.2	87.3
Zm00001d023424_P001	Maize	nucleus	55.9	87.1
Os11t0152700-01	Rice	nucleus	77.64	77.48
HORVU4Hr1G025130.10	Barley	nucleus	57.35	76.31
Os12t0152900-01	Rice	nucleus	75.16	74.23
TraesCS4D01G129900.1	Wheat	nucleus	73.91	66.36
TraesCS4A01G183400.2	Wheat	nucleus	73.91	65.99
TraesCS4B01G135000.1	Wheat	nucleus	74.12	63.25
KXG39494	Sorghum	nucleus	40.17	57.91
PGSC0003DMT400067782	Potato	nucleus	39.13	57.45
KXG36997	Sorghum	nucleus	39.54	57.36
EES02530	Sorghum	nucleus	38.92	56.97
Solyc11g068370.1.1	Tomato	nucleus	43.69	56.72
PGSC0003DMT400018306	Potato	nucleus	56.52	55.94
Solyc06g074320.2.1	Tomato	nucleus	57.14	55.09
VIT_06s0080g00360.t01	Wine grape	nucleus	55.9	54.0
Bra031622.1-P	Field mustard	nucleus	47.0	53.04
GSMUA_Achr2P06770_001	Banana	nucleus	52.38	52.93
CDY22689	Canola	nucleus	46.79	52.8
KRH26635	Soybean	nucleus	53.0	52.46
KRH22685	Soybean	nucleus	52.59	51.84
Bra018634.1-P	Field mustard	nucleus	50.72	51.58
AT1G08320.4	Thale cress	nucleus	50.72	50.94
KRH30432	Soybean	nucleus	51.97	50.91
CDX93571	Canola	nucleus	50.1	50.63
CDX95068	Canola	nucleus	50.1	50.63
KXG22247	Sorghum	nucleus	34.78	50.6
KRH25227	Soybean	nucleus	52.38	50.5
CDY06309	Canola	nucleus	50.1	50.0
KXG33735	Sorghum	nucleus	49.9	45.22
EES03778	Sorghum	nucleus	41.82	43.16
OQU78097	Sorghum	nucleus	46.17	42.72
KXG27222	Sorghum	nucleus	33.75	39.95
OQU89155	Sorghum	nucleus	34.78	39.53
KXG35912	Sorghum	nucleus	40.17	38.8
KXG38496	Sorghum	nucleus	24.02	37.3
OQU76203	Sorghum	nucleus	35.2	36.8
OQU76708	Sorghum	nucleus	22.57	35.05
KXG29702	Sorghum	nucleus	34.58	34.22
KXG20382	Sorghum	cytosol	11.18	34.18
OQU79985	Sorghum	golgi, vacuole	32.92	30.81

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1B6PB72	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:KXG22976	ProteinID:KXG22976	ProteinID:KXG22976.1	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF257
SMART:SM00338	EnsemblPlantsGene:SORBI_3008G037900	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0003C64B51	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3557721..3568195

Molecular Weight (calculated)

52727.8 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.480

Length

483 amino acids

Sequence
(BLAST)

001: MGDTSSSSHS RQDPCALGYG FHGAIANSIP ANFFDQDGGA YFGELEEAFM HQVASLARTQ QAATTSIAHH GDIKPFPTAA TVTAATTTAR PPPTLDIFPA
101: WPMRSLHTPK EGSNVTADST DDSESSSKNN SNHSDQHGAA ADMQSQFGQG SQQQQQQQLQ HKNMATSFTP RTGKTPDPKT IRRLAQNREA ARKSRLRKKA
201: YIQQLESSKL KLAQIEQDMQ RAHSQGIFLG GAPGANSSSG AAMFDVEYAR WLDDHGRRMA ELHGALHAHL PDGDLRAIVD DTLTHHDELF QLKASAAKSD
301: VFHLITGVWT TPAERCFLWM GGFRPSDLVK TLLPQLDPLT EQQLVGICNL QQSSQQAEEA LSQGLDQLHQ SLADTMAGGS LIDDTNMSFM GQMALALGKL
401: SNLEGFVIQA DNLRQQTLHQ MHRILTVRQA ARCFLAIGEY HNRLRALSSL WVSRPREILG ADEGNCGEIS IAAQASQSQF SSF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.