CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00131
EES02530
EES03778
EES05136
EES09234
EES10652
EES16520
KXG22247
KXG36997
KXG39494
OQU88196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	EES00131	AT1G64280.1	10659709
AT5G06960.1	EES00131	AT1G64280.1	10662863
AT5G06960.1	EES00131	AT1G64280.1	12383081
AT5G06960.1	EES00131	AT1G64280.1	15634206
AT5G06960.1	EES09234	AT2G41370.1	21798944
AT5G06960.1	EES16520	AT2G41370.1	21798944
AT5G06960.1	OQU88196	AT2G41370.1	21798944
AT5G06960.1	EES05136	AT3G02000.1	19218396
AT5G06960.1	EES10652	AT3G02000.1	19218396
AT5G06960.1	EES02530	AT5G06960.1	17098811
AT5G06960.1	EES03778	AT5G06960.1	17098811
AT5G06960.1	KXG22247	AT5G06960.1	17098811
AT5G06960.1	KXG36997	AT5G06960.1	17098811
AT5G06960.1	KXG39494	AT5G06960.1	17098811
AT5G06960.1	EES02530	AT5G06960.1	21798944
AT5G06960.1	EES03778	AT5G06960.1	21798944
AT5G06960.1	KXG22247	AT5G06960.1	21798944
AT5G06960.1	KXG36997	AT5G06960.1	21798944
AT5G06960.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0279900-01	Rice	nucleus	92.42	92.71
TraesCS3B01G220400.2	Wheat	nucleus	91.82	91.27
TraesCS3A01G190700.2	Wheat	nucleus	91.82	91.27
HORVU3Hr1G042790.4	Barley	nucleus	91.52	91.24
TraesCS3D01G194800.2	Wheat	nucleus	91.21	90.66
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	40.3	89.26
KRH36324	Soybean	nucleus	82.42	81.93
Solyc11g064950.1.1	Tomato	nucleus	80.0	81.48
PGSC0003DMT400024428	Potato	nucleus	80.0	81.48
KXG39494	Sorghum	nucleus	80.61	79.4
KXG36997	Sorghum	nucleus	79.39	78.68
CDY08443	Canola	nucleus	77.88	77.64
Zm00001d008225_P001	Maize	nucleus	98.48	77.38
Bra034767.1-P	Field mustard	nucleus	77.58	77.34
AT5G06950.5	Thale cress	nucleus	76.67	76.67
Bra001443.1-P	Field mustard	nucleus	76.36	76.13
CDX73830	Canola	nucleus	76.36	76.13
Bra009241.1-P	Field mustard	nucleus	71.52	76.13
Solyc01g008730.2.1	Tomato	nucleus	75.15	75.84
CDY00762	Canola	nucleus	75.76	75.53
CDX70053	Canola	nucleus	74.24	74.92
CDY50562	Canola	nucleus	75.76	74.85
Bra038705.1-P	Field mustard	nucleus	75.76	74.85
CDY52616	Canola	nucleus	75.45	74.77
CDX98971	Canola	nucleus	74.24	74.7
AT5G06960.1	Thale cress	nucleus	74.24	74.24
PGSC0003DMT400026710	Potato	mitochondrion	39.39	73.86
CDY05010	Canola	nucleus	72.42	73.31
Bra028713.1-P	Field mustard	nucleus	72.12	73.01
CDY14061	Canola	nucleus	72.12	73.01
AT3G12250.4	Thale cress	nucleus	76.97	71.55
KXG22247	Sorghum	nucleus	70.91	70.48
KRH66777	Soybean	nucleus	60.61	68.97
CDY42138	Canola	nucleus	66.36	67.59
PGSC0003DMT400060922	Potato	nucleus	51.21	63.06
Solyc10g080780.1.1	Tomato	cytosol	50.61	62.08
VIT_08s0007g05170.t01	Wine grape	nucleus	84.24	61.64
KRG93068	Soybean	nucleus	81.52	60.59
VIT_13s0084g00660.t01	Wine grape	nucleus	84.55	59.49
PGSC0003DMT400060926	Potato	nucleus	77.27	58.89
EES03778	Sorghum	nucleus	82.12	57.91
KRH20680	Soybean	nucleus	81.52	57.36
Solyc10g080770.1.1	Tomato	nucleus	77.27	56.67
KRG95103	Soybean	nucleus	78.79	56.64
KRH66771	Soybean	nucleus	78.79	56.52
KRH13334	Soybean	nucleus	81.21	53.92
OQU76203	Sorghum	nucleus	62.73	44.81
KXG27222	Sorghum	nucleus	53.03	42.89
KXG22976	Sorghum	nucleus	56.97	38.92
OQU82891	Sorghum	nucleus	56.67	38.32
OQU89155	Sorghum	nucleus	48.48	37.65
KXG38496	Sorghum	nucleus	35.15	37.3
KXG20382	Sorghum	cytosol	16.97	35.44
KXG35912	Sorghum	nucleus	53.33	35.2
KXG33735	Sorghum	nucleus	55.76	34.52
OQU78097	Sorghum	nucleus	52.42	33.14
KXG29702	Sorghum	nucleus	45.76	30.94
OQU76708	Sorghum	nucleus	29.09	30.87
OQU79985	Sorghum	golgi, vacuole	48.18	30.81

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:8061344	UniProt:C5XQR1
ncoils:Coil	EnsemblPlants:EES02530	ProteinID:EES02530	ProteinID:EES02530.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	EnsemblPlantsGene:SORBI_3003G081000	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI0001A84B60	RefSeq:XP_002457410.1	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:6962855..6973141

Molecular Weight (calculated)

36582.2 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.583

Length

330 amino acids

Sequence
(BLAST)

001: MADASPRTET STDDTDDNHG LEPGPGALGV ASDSSDRSKD KHGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV
101: DQSHSMSGNG ALAFDMEYAR WLEEHNRQIS ELRAGVSAHA SDTDLRSVVD KIMSHYDEIF RLKGNAAKAD VFHVLSGMWK TPAERCFLWL GGFRPSEVLK
201: LLSTQLEPLT EQQLSGIGNL QQSSQQAEDA LSQGMEALQQ SLAETLAGSL SSSGSTGNVA NYMGQMAMAM GKLGTLENFL RQADNLRLQT LQQMQRILTT
301: RQSARALLVI SDYSSRLRAL SSLWLARPKE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.