CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020938_P002	Maize	nucleus	93.8	96.5
Zm00001d006027_P002	Maize	nucleus	89.4	88.87
Os09t0489500-02	Rice	nucleus	83.6	79.92
TraesCS5A01G265600.1	Wheat	nucleus	78.6	75.87
TraesCS5D01G273500.1	Wheat	nucleus	78.4	75.68
TraesCS5B01G265300.1	Wheat	nucleus	79.0	75.1
HORVU5Hr1G073410.1	Barley	nucleus	79.4	70.02
GSMUA_Achr9P27700_001	Banana	nucleus	47.2	62.93
GSMUA_Achr3P11150_001	Banana	nucleus	51.8	62.56
PGSC0003DMT400029743	Potato	nucleus, plastid	46.8	61.58
CDY71150	Canola	nucleus, plastid	23.4	59.09
VIT_08s0007g06160.t01	Wine grape	nucleus	55.8	56.82
KRG95350	Soybean	nucleus	55.2	56.21
KRH67029	Soybean	nucleus	55.2	56.21
Bra009233.1-P	Field mustard	cytosol	31.2	55.71
Solyc10g078670.1.1	Tomato	nucleus	53.4	54.83
KRH71904	Soybean	nucleus	51.8	53.51
KXG36997	Sorghum	nucleus	35.6	53.45
EES02530	Sorghum	nucleus	35.2	53.33
KXG39494	Sorghum	nucleus	35.6	53.13
OQU89155	Sorghum	nucleus	44.8	52.71
CDY70396	Canola	mitochondrion	22.0	52.63
CDX98963	Canola	nucleus	47.4	52.55
CDX70061	Canola	nucleus	47.4	52.55
CDY70714	Canola	nucleus	36.8	52.27
CDY70235	Canola	nucleus	38.0	52.2
PGSC0003DMT400060865	Potato	nucleus	48.0	52.06
AT5G06839.3	Thale cress	nucleus	47.8	51.96
Solyc10g080410.1.1	Tomato	nucleus	47.6	51.85
Bra005914.1-P	Field mustard	nucleus	44.0	50.69
KRH32997	Soybean	nucleus	52.2	50.48
GSMUA_Achr9P20200_001	Banana	plastid	52.2	47.71
KXG22247	Sorghum	nucleus	31.2	46.99
OQU76708	Sorghum	nucleus	27.0	43.41
KXG20382	Sorghum	cytosol	13.4	42.41
KXG29702	Sorghum	nucleus	41.0	42.01
EES03778	Sorghum	nucleus	39.2	41.88
KXG22976	Sorghum	nucleus	38.8	40.17
KXG27222	Sorghum	nucleus	31.8	38.97
OQU82891	Sorghum	nucleus	37.6	38.52
KXG38496	Sorghum	nucleus	23.4	37.62
OQU76203	Sorghum	nucleus	33.8	36.58
OQU78097	Sorghum	nucleus	37.2	35.63
KXG33735	Sorghum	nucleus	36.6	34.33
OQU79985	Sorghum	golgi, vacuole	31.4	30.43

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1B6QDB8	ncoils:Coil	GO:GO:0000003
GO:GO:0002237	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0042803	GO:GO:0043565	GO:GO:0048653	GO:GO:0071588	InterPro:IPR004827
InterPro:IPR025422	EnsemblPlants:KXG35912	ProteinID:KXG35912	ProteinID:KXG35912.2	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF179	SMART:SM00338
EnsemblPlantsGene:SORBI_3002G247300	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0009DC8711	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:63529168..63538802

Molecular Weight (calculated)

55735.2 Da

IEP (calculated)

7.437

GRAVY (calculated)

-0.561

Length

500 amino acids

Sequence
(BLAST)

001: MVSGGSIKEQ QHEMNISFGM MNHHHQQQPP SSSSSSSMHA AAASFIRSGK EASGAYDHLG ELDQALFMYL DHGSSHVHGG TQQEHQRQTL NIFPSQPMHV
101: EPSPKGEISL VLSPAPVGSK QPARSPDHHH HQHQQAAMEE LAGSRRQQQE HHHLQHQPFA AAAAEPAAPV GMIKDVKPLA KKDHRRGTST SERDPKTLRR
201: LAQNREAARK SRLRKKAYIQ QLESSRIRLA QLEQELHTAR AQGVFFPNSG ILADQGVAGK GVPIGGIDGL SSEAAMFDVE YGRWQEEHYR LMYELRAALQ
301: QHLPEGELQM YVESCLAHHD EMVGIKEGAI KGDVFHLISG VWRSPAERCF LWLGGFRPSE VIKMLLSHVE PLTEQQIVGV YGLQQSALET EEALSQGLEA
401: LYQSLSDTVV SDALSCPSNV ANYMGQMAAA MNKLSTLEGF VRQAENLRQQ TLHRLHQILT TRQMARSLLA MSDYFHRLRT LSSLWVTRPR APQEQQQGHS

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.