CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70061	Canola	nucleus	99.33	99.33
CDY71150	Canola	nucleus, plastid	41.24	93.94
CDY70235	Canola	nucleus	75.61	93.68
AT5G06839.3	Thale cress	nucleus	93.13	91.3
CDY70714	Canola	nucleus	66.52	85.23
CDY70396	Canola	mitochondrion	35.48	76.56
PGSC0003DMT400029743	Potato	nucleus, plastid	55.65	66.05
KRH67029	Soybean	nucleus	66.96	61.51
GSMUA_Achr9P27700_001	Banana	nucleus	51.0	61.33
KRG95350	Soybean	nucleus	66.74	61.3
VIT_08s0007g06160.t01	Wine grape	nucleus	65.63	60.29
GSMUA_Achr3P11150_001	Banana	nucleus	53.66	58.45
KRH71904	Soybean	nucleus	62.53	58.26
Solyc10g080410.1.1	Tomato	nucleus	58.98	57.95
PGSC0003DMT400060865	Potato	nucleus	58.09	56.83
Solyc10g078670.1.1	Tomato	nucleus	60.75	56.26
KRH32997	Soybean	nucleus	62.08	54.16
CDY05010	Canola	nucleus	39.02	53.99
CDY14061	Canola	nucleus	39.02	53.99
CDY08443	Canola	nucleus	39.02	53.17
CDX98971	Canola	nucleus	38.58	53.05
CDX70053	Canola	nucleus	38.36	52.91
CDY00762	Canola	nucleus	37.92	51.66
CDX73830	Canola	nucleus	37.92	51.66
CDY50562	Canola	nucleus	38.14	51.5
CDY52616	Canola	nucleus	37.92	51.35
Zm00001d020938_P002	Maize	nucleus	52.99	49.18
KXG35912	Sorghum	nucleus	52.55	47.4
CDY42138	Canola	nucleus	32.59	45.37
GSMUA_Achr9P20200_001	Banana	plastid	54.32	44.79
CDX68037	Canola	nucleus	36.81	44.74
CDY38843	Canola	nucleus	36.59	44.59
Zm00001d006027_P002	Maize	nucleus	49.67	44.53
CDY41495	Canola	nucleus	36.36	44.44
TraesCS5D01G273500.1	Wheat	nucleus	50.78	44.21
TraesCS5A01G265600.1	Wheat	nucleus	50.78	44.21
Os09t0489500-02	Rice	nucleus	51.22	44.17
CDY38253	Canola	nucleus	37.69	44.16
TraesCS5B01G265300.1	Wheat	nucleus	51.44	44.11
CDY22689	Canola	nucleus	41.69	43.93
CDY40074	Canola	nucleus	33.26	41.44
CDX85782	Canola	nucleus	33.26	41.44
HORVU5Hr1G073410.1	Barley	nucleus	51.44	40.92
CDY21336	Canola	nucleus	37.69	40.67
CDY08810	Canola	nucleus	33.04	40.6
CDX95068	Canola	nucleus	43.02	40.59
CDX93571	Canola	nucleus	42.79	40.38
CDY06309	Canola	nucleus	42.79	39.88
CDX69866	Canola	nucleus	32.15	39.84
CDY21625	Canola	nucleus	32.15	39.84
CDY33975	Canola	nucleus	32.37	39.46
CDY37811	Canola	nucleus	32.37	39.46
CDY14552	Canola	nucleus	31.93	39.24
CDX95999	Canola	nucleus	37.47	38.24
CDY38608	Canola	nucleus	37.47	38.24
CDX88399	Canola	nucleus	36.36	38.14
CDY18683	Canola	cytosol	31.26	37.9
CDX81273	Canola	nucleus	32.59	37.79
CDX87494	Canola	nucleus	36.59	37.16
CDY00417	Canola	mitochondrion	15.08	29.31
CDX79240	Canola	nucleus	32.15	25.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078EI05	EnsemblPlants:CDX98963	ProteinID:CDX98963
ProteinID:CDX98963.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00107078001	InterPro:IPR004827	InterPro:IPR025422
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0004EE8F7C	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaC09g48720D

Coordinates

chrLK031907:+:822914..828758

Molecular Weight (calculated)

50180.4 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.551

Length

451 amino acids

Sequence
(BLAST)

001: MQGHHQNHHQ QLSSASATSS SGNFMNKDGY DLGEIDPSLF LYLDGQGHHD QPSTAPLPHH HTTQNLAMRP PTSTLNIFPS KPMHIEPPPS SSTPNAVAPS
101: GSTRPSSEPS MDLTNHSQFQ LPQPSKSIKK EGNRKGLASS DHDTPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE IQRARSQGVF
201: YGGSLMGGDQ QQGGMPIGPG YTSSAEAAVF DMEYTRWLEE QQRLLTELRV ATQEHLAENE LRMFVDTCLA HYDHLINLKA MVAKTDVFHL ISGAWKTPAE
301: RCFLWMGGFR PSEIIKVIVN QIEPLTEQQI VGICGLQQST HEAEEALSQG LEALNQSLSD SIVSDSLSPA SAQLPPHLSN FMSHMSLALN KLSSLEGFVL
401: QADNLRHQTI HRLNQLLTTR QEARCILAVA EYFHRLQALS SLWLARPRQE G

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.