Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18683 | Canola | cytosol | 92.8 | 97.04 |
| CDY33975 | Canola | nucleus | 87.4 | 91.89 |
| CDY08810 | Canola | nucleus | 86.63 | 91.83 |
| CDY37811 | Canola | nucleus | 86.89 | 91.35 |
| CDY14552 | Canola | nucleus | 85.35 | 90.46 |
| AT5G65210.2 | Thale cress | nucleus | 83.8 | 88.59 |
| CDX85782 | Canola | nucleus | 75.84 | 81.49 |
| CDY40074 | Canola | nucleus | 75.06 | 80.66 |
| CDX69866 | Canola | nucleus | 74.29 | 79.4 |
| CDY21625 | Canola | nucleus | 72.49 | 77.47 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 64.52 | 71.92 |
| KRG97639 | Soybean | nucleus | 62.21 | 66.85 |
| KRH31239 | Soybean | nucleus | 61.7 | 65.93 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 57.58 | 61.37 |
| KRH59415 | Soybean | nucleus | 58.1 | 61.08 |
| KRH43266 | Soybean | nucleus | 59.13 | 60.69 |
| Solyc04g011670.2.1 | Tomato | nucleus | 57.33 | 59.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.24 | 59.6 |
| Bra037374.1-P | Field mustard | nucleus | 47.81 | 59.24 |
| PGSC0003DMT400033308 | Potato | nucleus | 53.73 | 58.71 |
| Solyc04g054320.2.1 | Tomato | nucleus | 55.78 | 58.65 |
| GSMUA_Achr10P... | Banana | nucleus | 51.16 | 56.7 |
| CDY41495 | Canola | nucleus | 53.21 | 56.1 |
| CDY38843 | Canola | nucleus | 53.21 | 55.95 |
| CDY38253 | Canola | nucleus | 54.5 | 55.06 |
| CDX68037 | Canola | nucleus | 52.19 | 54.72 |
| Zm00001d016312_P001 | Maize | cytosol | 12.85 | 53.76 |
| PGSC0003DMT400016235 | Potato | nucleus | 53.47 | 53.06 |
| CDY21336 | Canola | nucleus | 54.76 | 50.96 |
| CDY05010 | Canola | nucleus | 42.16 | 50.31 |
| CDY14061 | Canola | nucleus | 42.16 | 50.31 |
| CDY08443 | Canola | nucleus | 42.67 | 50.15 |
| CDX98971 | Canola | nucleus | 41.9 | 49.7 |
| CDX73830 | Canola | nucleus | 42.16 | 49.55 |
| CDX70053 | Canola | nucleus | 41.65 | 49.54 |
| CDY50562 | Canola | nucleus | 42.42 | 49.4 |
| CDY00762 | Canola | nucleus | 41.9 | 49.24 |
| CDY52616 | Canola | nucleus | 41.9 | 48.95 |
| CDX88399 | Canola | nucleus | 52.7 | 47.67 |
| Os04t0637000-01 | Rice | nucleus | 48.33 | 47.36 |
| CDX87494 | Canola | nucleus | 53.47 | 46.85 |
| KXG27222 | Sorghum | nucleus | 47.81 | 45.59 |
| KXG38496 | Sorghum | nucleus | 36.25 | 45.34 |
| Zm00001d026398_P006 | Maize | nucleus | 46.79 | 44.17 |
| KRG92164 | Soybean | nucleus | 26.22 | 43.4 |
| CDY42138 | Canola | nucleus | 35.73 | 42.9 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 46.79 | 42.82 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 47.81 | 42.76 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 46.02 | 42.72 |
| CDY70396 | Canola | mitochondrion | 22.88 | 42.58 |
| KRH34622 | Soybean | cytosol | 25.19 | 42.42 |
| Zm00001d024160_P003 | Maize | nucleus | 46.02 | 42.22 |
| CDY71150 | Canola | nucleus, plastid | 21.34 | 41.92 |
| Os08t0176900-01 | Rice | nucleus | 39.85 | 39.85 |
| Zm00001d002143_P002 | Maize | cytosol | 43.7 | 38.72 |
| Zm00001d041428_P001 | Maize | cytosol | 15.17 | 37.82 |
| CDX95999 | Canola | nucleus | 40.62 | 35.75 |
| CDY38608 | Canola | nucleus | 40.36 | 35.52 |
| CDY22689 | Canola | nucleus | 39.07 | 35.51 |
| OQU79985 | Sorghum | golgi, vacuole | 47.04 | 35.47 |
| CDY70714 | Canola | nucleus | 30.85 | 34.09 |
| CDX70061 | Canola | nucleus | 38.05 | 32.82 |
| CDX98963 | Canola | nucleus | 37.79 | 32.59 |
| CDX95068 | Canola | nucleus | 39.85 | 32.43 |
| CDY70235 | Canola | nucleus | 30.33 | 32.42 |
| CDX93571 | Canola | nucleus | 39.59 | 32.22 |
| CDY06309 | Canola | nucleus | 39.85 | 32.02 |
| CDX79240 | Canola | nucleus | 46.02 | 31.4 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 31.11 | 28.61 |
| CDY00417 | Canola | mitochondrion | 16.71 | 28.02 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | GO:A0A078D1P7 | EnsemblPlants:CDX81273 | ProteinID:CDX81273 |
| ProteinID:CDX81273.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00134784001 | InterPro:IPR004827 | InterPro:IPR025422 |
| PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF266 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0004EE28EC | InterPro:bZIP |
Description
BnaC09g06840D
Coordinates
chrLK031824:+:623365..626866
Molecular Weight (calculated)
44424.9 Da
IEP (calculated)
8.339
GRAVY (calculated)
-0.552
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSTSTHFVP PRRVNIYEPL HQFGMWGETF KSNIGNGNIN TPSHIIIPNN QKLDNNLSED TSHGTPLIFD QETSTSRHPD KIKRRLAQNR EAAKKSRLRK
101: KAYVQQLETS RLKLIQLEQE LDRARQQGFY VGNGIDTSTT TSLGFSENMN PGLYQEQGSI DKNQNLNVKI KTGIAAFEME YGQWIEEQNK QICELRTVLQ
201: GHVGDVELRL LVEIAMKHYF DLFRMKSAAA KEDVFFVMSG MWRTSAERFF LWIGGFRPSD LIKVLLPHFD VMTDQQILDV CNLRQSCQQA EDALSQGMEK
301: LQHTLADCVA GGRLGEGNYI PQVNSAMERA EASVSFVNQA DHLRHETLQQ MHRILTTRQA ARGLLALGEY FQRLRALSSS WATRHREPT
101: KAYVQQLETS RLKLIQLEQE LDRARQQGFY VGNGIDTSTT TSLGFSENMN PGLYQEQGSI DKNQNLNVKI KTGIAAFEME YGQWIEEQNK QICELRTVLQ
201: GHVGDVELRL LVEIAMKHYF DLFRMKSAAA KEDVFFVMSG MWRTSAERFF LWIGGFRPSD LIKVLLPHFD VMTDQQILDV CNLRQSCQQA EDALSQGMEK
301: LQHTLADCVA GGRLGEGNYI PQVNSAMERA EASVSFVNQA DHLRHETLQQ MHRILTTRQA ARGLLALGEY FQRLRALSSS WATRHREPT
001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
Arabidopsis Description
TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.