Factsheet for PGSC0003DMT400016235

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011670.2.1	Tomato	nucleus	85.71	89.84
PGSC0003DMT400033308	Potato	nucleus	67.35	74.16
VIT_07s0031g01320.t01	Wine grape	nucleus	59.18	66.48
AT5G10030.3	Thale cress	nucleus	56.38	60.71
Bra028604.1-P	Field mustard	nucleus	54.59	59.12
CDX85782	Canola	nucleus	54.59	59.12
KRG97639	Soybean	nucleus	54.34	58.84
AT5G65210.2	Thale cress	nucleus	55.1	58.7
CDY08810	Canola	nucleus	54.85	58.58
Bra024366.1-P	Field mustard	nucleus	54.85	58.58
CDY40074	Canola	nucleus	53.83	58.29
KRH31239	Soybean	nucleus	54.08	58.24
CDY14552	Canola	nucleus	54.08	57.77
GSMUA_Achr5P16630_001	Banana	nucleus	53.32	57.26
CDY33975	Canola	nucleus	53.83	57.03
CDX69866	Canola	nucleus	52.81	56.87
Bra009063.1-P	Field mustard	nucleus	52.81	56.87
CDY37811	Canola	nucleus	53.57	56.76
Bra031871.1-P	Field mustard	nucleus	53.57	56.76
CDY21625	Canola	nucleus	51.53	55.49
PGSC0003DMT400024428	Potato	nucleus	45.66	55.25
Zm00001d016312_P001	Maize	cytosol	13.01	54.84
GSMUA_AchrUn_...	Banana	nucleus	49.49	54.8
CDY18683	Canola	cytosol	51.79	54.57
GSMUA_Achr10P...	Banana	nucleus	48.21	53.85
CDX81273	Canola	nucleus	53.06	53.47
KRH59415	Soybean	nucleus	50.26	53.24
KRH43266	Soybean	nucleus	50.77	52.51
PGSC0003DMT400070884	Potato	nucleus	47.45	51.52
PGSC0003DMT400043651	Potato	nucleus	46.94	50.97
Bra037809.1-P	Field mustard	nucleus	50.51	50.51
PGSC0003DMT400026710	Potato	mitochondrion	21.17	47.16
PGSC0003DMT400060922	Potato	nucleus	31.38	45.9
KXG27222	Sorghum	nucleus	45.92	44.12
Os04t0637000-01	Rice	nucleus	44.64	44.08
Zm00001d026398_P006	Maize	nucleus	45.41	43.2
TraesCS2A01G526300.1	Wheat	nucleus	43.88	41.05
PGSC0003DMT400060926	Potato	nucleus	45.15	40.88
Zm00001d041428_P001	Maize	cytosol	16.07	40.38
KRG92164	Soybean	nucleus	23.98	40.0
TraesCS2D01G529000.1	Wheat	nucleus	43.37	40.0
KXG38496	Sorghum	nucleus	31.63	39.87
TraesCS2B01G556600.1	Wheat	nucleus	44.13	39.77
KRH34622	Soybean	cytosol	23.21	39.39
PGSC0003DMT400029743	Potato	nucleus, plastid	38.01	39.21
Zm00001d024160_P003	Maize	nucleus	41.07	37.97
Zm00001d002143_P002	Maize	cytosol	42.35	37.81
PGSC0003DMT400067782	Potato	nucleus	31.12	37.08
Os08t0176900-01	Rice	nucleus	35.97	36.25
Bra037374.1-P	Field mustard	nucleus	28.83	35.99
PGSC0003DMT400033741	Potato	nucleus	42.35	34.37
PGSC0003DMT400060865	Potato	nucleus	39.29	33.41
OQU79985	Sorghum	golgi, vacuole	43.11	32.75
PGSC0003DMT400018306	Potato	nucleus	38.01	30.53
HORVU2Hr1G116090.2	Barley	cytosol	29.59	27.42

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:M1A7B6	PFAM:PF00170	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400006345	PGSC:PGSC0003DMG400006345
EnsemblPlants:PGSC0003DMT400016235	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296DDFC	InterPro:bZIP	:

Description

Mas-binding factor MBF3 [Source:PGSC_GENE;Acc:PGSC0003DMG400006345]

Coordinates

chr4:+:7521091..7524896

Molecular Weight (calculated)

44155.8 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.331

Length

392 amino acids

Sequence
(BLAST)

001: MGMWDDFNAS CPSTSATMIL EVEKCLEDQI PIMIETEDTS HGTVGTSNRY EAETSKPIEK VLRRLAQNRE AARKSRLRKK AYVQQLENSK LKLIQLEQEL
101: DRARKQGLHV GAGLDASQLS YSGTASSGTA VFDTEYGQWV EEQNRQTNDL RNALHHSQIS EAELRIIVDG CLNHYFELFR VKATAAKADV LYIMSGMWKT
201: SAERFFMWIG GFRPSELLKV LTPHPELLTE QQLREVCNLR QSCQQAEDAL SQGMVKLHQI LGEAVAAGRL GEGNYSLPQM GPAIEKLEAL VRFVNQVVSH
301: IGFSFLSIDV LAFKVISINF MSYAPVKDSE YTYSTLKGKM GEADHLRQET LQQMSRILNT HQAAQGLLAL GEYFEQLRVL SSHWATRLHE PA

Best Arabidopsis Sequence Match ( AT5G10030.1 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.