Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028604.1-P Field mustard nucleus 98.62 98.62
CDX85782 Canola nucleus 98.62 98.62
AT5G10030.3 Thale cress nucleus 90.88 90.38
CDX69866 Canola nucleus 90.88 90.38
CDY21625 Canola nucleus 89.23 88.74
CDY33975 Canola nucleus 83.43 81.62
CDY08810 Canola nucleus 82.32 81.2
CDY37811 Canola nucleus 82.6 80.81
CDY14552 Canola nucleus 80.66 79.56
CDY18683 Canola cytosol 78.73 76.61
CDX81273 Canola nucleus 80.66 75.06
VIT_07s0031g01320.t01 Wine grape nucleus 69.61 72.21
KRG97639 Soybean nucleus 68.78 68.78
KRH31239 Soybean nucleus 68.23 67.86
KRH59415 Soybean nucleus 63.81 62.43
GSMUA_Achr5P16630_001 Banana nucleus 62.15 61.64
KRH43266 Soybean nucleus 64.36 61.48
Solyc04g011670.2.1 Tomato nucleus 61.88 59.89
GSMUA_AchrUn_... Banana nucleus 57.46 58.76
Zm00001d016312_P001 Maize cytosol 14.92 58.06
PGSC0003DMT400033308 Potato nucleus 56.63 57.58
Solyc04g054320.2.1 Tomato nucleus 58.84 57.57
GSMUA_Achr10P... Banana nucleus 54.97 56.7
CDY38843 Canola nucleus 55.52 54.32
CDY41495 Canola nucleus 55.25 54.2
PGSC0003DMT400016235 Potato nucleus 58.29 53.83
CDY38253 Canola nucleus 57.18 53.77
CDX68037 Canola nucleus 54.7 53.37
CDY08443 Canola nucleus 46.96 51.36
CDY50562 Canola nucleus 46.69 50.6
CDY52616 Canola nucleus 46.41 50.45
CDY14061 Canola nucleus 45.3 50.31
CDY05010 Canola nucleus 45.3 50.31
CDX98971 Canola nucleus 45.58 50.3
CDX70053 Canola nucleus 45.3 50.15
Os04t0637000-01 Rice nucleus 54.7 49.87
CDX73830 Canola nucleus 45.3 49.55
CDY00762 Canola nucleus 45.3 49.55
CDY21336 Canola nucleus 56.91 49.28
KXG27222 Sorghum nucleus 52.76 46.81
CDX88399 Canola nucleus 55.52 46.74
CDX87494 Canola nucleus 56.35 45.95
Zm00001d026398_P006 Maize nucleus 51.66 45.39
CDY42138 Canola nucleus 39.78 44.44
KXG38496 Sorghum nucleus 38.12 44.37
KRG92164 Soybean nucleus 28.73 44.26
TraesCS2A01G526300.1 Wheat nucleus 51.1 44.15
TraesCS2D01G529000.1 Wheat nucleus 51.38 43.76
TraesCS2B01G556600.1 Wheat nucleus 52.49 43.68
CDY71150 Canola nucleus, plastid 23.48 42.93
KRH34622 Soybean cytosol 27.07 42.42
Zm00001d024160_P003 Maize nucleus 49.45 42.22
CDY70396 Canola mitochondrion 24.31 42.11
Zm00001d002143_P002 Maize cytosol 48.34 39.86
Os08t0176900-01 Rice nucleus 42.82 39.85
Zm00001d041428_P001 Maize cytosol 16.57 38.46
CDX95999 Canola nucleus 45.86 37.56
CDY38608 Canola nucleus 45.86 37.56
CDY22689 Canola nucleus 41.71 35.28
OQU79985 Sorghum golgi, vacuole 50.28 35.27
CDY70714 Canola nucleus 33.98 34.94
CDY70235 Canola nucleus 33.7 33.52
CDX70061 Canola nucleus 41.71 33.48
CDX98963 Canola nucleus 41.44 33.26
CDX95068 Canola nucleus 42.54 32.22
CDX93571 Canola nucleus 42.27 32.01
CDY06309 Canola nucleus 42.54 31.82
CDY00417 Canola mitochondrion 19.89 31.03
CDX79240 Canola nucleus 47.51 30.18
HORVU2Hr1G116090.2 Barley cytosol 33.43 28.61
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1MapMan:15.5.4.7.1GO:A0A078HS17UniProt:A0A078HS17EnsemblPlants:CDY40074
ProteinID:CDY40074ProteinID:CDY40074.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00068983001InterPro:IPR004827
InterPro:IPR025422PFAM:PF00170PFAM:PF14144ScanProsite:PS00036PFscan:PS50217PFscan:PS51806
PANTHER:PTHR22952PANTHER:PTHR22952:SF266SMART:SM00338SUPFAM:SSF57959InterPro:TGA_domainUniParc:UPI0004EF4AEA
InterPro:bZIP:::::
Description
BnaC02g00560DBnaC02g00560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS17]
Coordinates
chrLK032463:-:72316..75513
Molecular Weight (calculated)
41688.6 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.563
Length
362 amino acids
Sequence
(BLAST)
001: MNTTSTHFVP PRRFEIYETT LNQVSMWEEN FKNNGGIYIP NSIIIPTDAK QDSLSEDTSH GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY
101: VQQLETSRLK LIHLEQELDR ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE LRLLVDNAMK HYFQLFRMKS
201: AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM
301: ERLEALVSFV DQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE PT
Best Arabidopsis Sequence Match ( AT5G10030.2 )
(BLAST)
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.