Factsheet for Solyc04g054320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033308	Potato	nucleus	94.59	98.31
Solyc04g011670.2.1	Tomato	nucleus	77.3	76.47
VIT_07s0031g01320.t01	Wine grape	nucleus	64.32	68.19
KRG97639	Soybean	nucleus	62.43	63.81
KRH31239	Soybean	nucleus	61.62	62.64
AT5G10030.3	Thale cress	nucleus	60.54	61.54
GSMUA_Achr5P16630_001	Banana	nucleus	60.54	61.37
AT5G65210.2	Thale cress	nucleus	60.54	60.87
CDY08810	Canola	nucleus	60.27	60.76
Bra024366.1-P	Field mustard	nucleus	60.27	60.76
Zm00001d016312_P001	Maize	cytosol	15.14	60.22
CDY14552	Canola	nucleus	59.19	59.67
Bra031871.1-P	Field mustard	nucleus	59.46	59.46
CDY37811	Canola	nucleus	59.46	59.46
CDX85782	Canola	nucleus	58.11	59.39
Bra028604.1-P	Field mustard	nucleus	58.11	59.39
CDY33975	Canola	nucleus	59.19	59.19
CDX69866	Canola	nucleus	58.11	59.07
Bra009063.1-P	Field mustard	nucleus	58.11	59.07
CDY40074	Canola	nucleus	57.57	58.84
GSMUA_AchrUn_...	Banana	nucleus	55.41	57.91
KRH59415	Soybean	nucleus	57.57	57.57
Solyc12g056860.1.1	Tomato	nucleus	54.05	57.47
CDY21625	Canola	nucleus	56.22	57.14
KRH43266	Soybean	nucleus	58.38	56.99
CDY18683	Canola	cytosol	57.03	56.72
GSMUA_Achr10P...	Banana	nucleus	53.24	56.13
Solyc04g072460.2.1	Tomato	nucleus	54.59	55.96
CDX81273	Canola	nucleus	58.65	55.78
Solyc11g064950.1.1	Tomato	nucleus	46.49	53.09
Bra037809.1-P	Field mustard	nucleus	56.22	53.06
Solyc01g008730.2.1	Tomato	nucleus	46.22	52.29
Os04t0637000-01	Rice	nucleus	51.35	47.86
KXG27222	Sorghum	nucleus	50.54	45.83
Zm00001d026398_P006	Maize	nucleus	50.0	44.9
KXG38496	Sorghum	nucleus	36.22	43.09
Zm00001d041428_P001	Maize	cytosol	18.11	42.95
TraesCS2A01G526300.1	Wheat	nucleus	48.11	42.48
Solyc10g080780.1.1	Tomato	cytosol	30.54	42.01
TraesCS2D01G529000.1	Wheat	nucleus	47.84	41.65
TraesCS2B01G556600.1	Wheat	nucleus	48.65	41.38
KRG92164	Soybean	nucleus	26.22	41.28
KRH34622	Soybean	cytosol	25.68	41.13
Bra037374.1-P	Field mustard	nucleus	34.59	40.76
Zm00001d024160_P003	Maize	nucleus	46.49	40.57
Zm00001d002143_P002	Maize	cytosol	47.3	39.86
Solyc11g068370.1.1	Tomato	nucleus	38.65	38.44
Os08t0176900-01	Rice	nucleus	40.0	38.05
Solyc10g080770.1.1	Tomato	nucleus	45.41	37.33
OQU79985	Sorghum	golgi, vacuole	48.38	34.69
Solyc05g009660.2.1	Tomato	nucleus	44.59	34.09
Solyc10g080410.1.1	Tomato	nucleus	41.08	33.12
Solyc06g074320.2.1	Tomato	nucleus	41.62	30.74
Solyc10g078670.1.1	Tomato	nucleus	40.0	30.39
HORVU2Hr1G116090.2	Barley	cytosol	31.89	27.9

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:AF387785	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	UniProt:Q94EX6	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc04g054320.2	EnsemblPlants:Solyc04g054320.2.1	InterPro:TGA_domain	UniParc:UPI00000AA075	InterPro:bZIP	SEG:seg

Description

Leucine-zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94EX6]

Coordinates

chr4:-:52296653..52303894

Molecular Weight (calculated)

41765.9 Da

IEP (calculated)

5.194

GRAVY (calculated)

-0.389

Length

370 amino acids

Sequence
(BLAST)

001: MNSSTYTQFV ASKRMGICDP IHQIGMWGDF KGSSFPDSLI LEVENCLENE MPIMEKRLEN EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK
101: SRLRKKAYVQ QLENSKLKLL QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RQTDDLRNAL NSQMGEIELR ILVEDCLNHY
201: FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI
301: LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGD YFKRLRALSS LWAGRLSEPA

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.