Factsheet for Solyc01g008730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc04g040220.2.1
Solyc05g015910.1.1
Solyc05g018160.1.1
Solyc07g040690.2.1
Solyc10g079460.1.1
Solyc10g079750.1.1
Solyc11g064950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	10659709
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	12383081
AT5G06960.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT5G06960.1	Solyc04g040220.2.1	AT2G41370.1	21798944
AT5G06960.1	Solyc05g018160.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc10g079460.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc10g079750.1.1	AT2G41370.1	21798944
AT5G06960.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc05g015910.1.1	AT3G02000.1	19218396
AT5G06960.1	Solyc01g008730.2.1	AT5G06960.1	17098811
AT5G06960.1	Solyc11g064950.1.1	AT5G06960.1	17098811
AT5G06960.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT5G06960.1	Solyc11g064950.1.1	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g064950.1.1	Tomato	nucleus	87.46	88.27
GSMUA_Achr8P05800_001	Banana	nucleus	81.96	80.72
KRH36324	Soybean	nucleus	81.35	80.12
GSMUA_Achr3P25020_001	Banana	nucleus	80.12	78.92
Os01t0279900-01	Rice	nucleus	77.98	77.51
KXG36997	Sorghum	nucleus	77.98	76.58
Os03t0318600-01	Rice	nucleus	77.68	76.28
Zm00001d022542_P002	Maize	nucleus	77.37	75.98
TraesCS3A01G190700.2	Wheat	nucleus	77.06	75.9
TraesCS3B01G220400.2	Wheat	nucleus	77.06	75.9
HORVU3Hr1G042790.4	Barley	nucleus	76.76	75.83
KXG39494	Sorghum	nucleus	77.68	75.82
Os07t0687700-01	Rice	nucleus	77.37	75.75
TraesCS4A01G126300.2	Wheat	nucleus	77.37	75.52
TraesCS4D01G180200.4	Wheat	nucleus	77.37	75.52
TraesCS4B01G178600.1	Wheat	nucleus	77.06	75.45
HORVU4Hr1G052330.3	Barley	nucleus	77.06	75.45
TraesCS3D01G194800.2	Wheat	nucleus	76.45	75.3
CDY08443	Canola	nucleus	76.15	75.23
AT5G06950.5	Thale cress	nucleus	75.84	75.15
EES02530	Sorghum	nucleus	75.84	75.15
Bra034767.1-P	Field mustard	nucleus	75.84	74.92
Bra009241.1-P	Field mustard	nucleus	70.95	74.84
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	33.95	74.5
TraesCS2B01G113200.2	Wheat	nucleus	76.15	74.11
CDX70053	Canola	nucleus	74.01	74.01
TraesCS2D01G096800.2	Wheat	nucleus	75.84	73.81
CDX98971	Canola	nucleus	74.01	73.78
TraesCS2A01G097500.2	Wheat	nucleus	75.54	73.51
AT5G06960.1	Thale cress	nucleus	74.01	73.33
Bra038705.1-P	Field mustard	nucleus	74.62	73.05
CDY50562	Canola	nucleus	74.62	73.05
CDY52616	Canola	nucleus	74.31	72.97
Bra028713.1-P	Field mustard	nucleus	71.87	72.09
CDY14061	Canola	nucleus	71.87	72.09
CDY00762	Canola	nucleus	72.78	71.9
CDX73830	Canola	nucleus	72.78	71.9
Bra001443.1-P	Field mustard	nucleus	72.78	71.9
CDY05010	Canola	nucleus	71.56	71.78
HORVU2Hr1G016580.5	Barley	nucleus	72.78	70.62
AT3G12250.4	Thale cress	nucleus	75.54	69.58
CDY42138	Canola	nucleus	65.75	66.36
KXG22247	Sorghum	nucleus	63.91	62.95
Solyc10g080780.1.1	Tomato	cytosol	51.38	62.45
KRG93068	Soybean	nucleus	82.57	60.81
Os05t0492000-00	Rice	nucleus	61.16	60.61
Zm00001d008225_P001	Maize	nucleus	76.15	59.29
Zm00001d028936_P001	Maize	nucleus	69.42	58.06
GSMUA_Achr10P...	Banana	nucleus	80.43	57.55
VIT_13s0084g00660.t01	Wine grape	nucleus	81.96	57.14
Zm00001d010658_P001	Maize	nucleus	59.94	56.81
TraesCS1A01G096300.1	Wheat	nucleus	58.1	56.72
TraesCS1D01G105300.1	Wheat	nucleus	58.41	56.34
KRH20680	Soybean	nucleus	79.2	55.22
GSMUA_Achr11P...	Banana	nucleus	80.43	55.02
TraesCS1B01G127400.1	Wheat	nucleus	57.19	55.0
EES03778	Sorghum	nucleus	78.59	54.91
Solyc10g080770.1.1	Tomato	nucleus	74.62	54.22
TraesCS3A01G334100.1	Wheat	nucleus	76.76	52.84
TraesCS3B01G365100.1	Wheat	nucleus	77.06	52.83
TraesCS3D01G327600.1	Wheat	nucleus	76.76	52.62
HORVU3Hr1G079010.5	Barley	nucleus	76.45	52.41
KRH13334	Soybean	nucleus	79.51	52.31
HORVU1Hr1G068220.1	Barley	nucleus	54.43	51.9
Zm00001d043153_P001	Maize	nucleus	63.91	49.53
Solyc04g011670.2.1	Tomato	nucleus	55.35	48.4
Zm00001d012553_P003	Maize	nucleus	68.81	47.87
Solyc11g068370.1.1	Tomato	nucleus	54.43	47.85
Solyc12g056860.1.1	Tomato	nucleus	50.46	47.41
Solyc05g009660.2.1	Tomato	nucleus	69.11	46.69
Solyc04g054320.2.1	Tomato	nucleus	52.29	46.22
Solyc04g072460.2.1	Tomato	nucleus	50.15	45.43
HORVU0Hr1G032230.4	Barley	nucleus	44.34	41.31
Os01t0808100-01	Rice	nucleus	44.95	40.38
Solyc10g080410.1.1	Tomato	nucleus	53.21	37.91
Solyc06g074320.2.1	Tomato	nucleus	57.49	37.52
Solyc10g078670.1.1	Tomato	nucleus	54.13	36.34

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:K4AT69	PFAM:PF07716	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF357	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc01g008730.2	EnsemblPlants:Solyc01g008730.2.1	InterPro:TGA_domain	UniParc:UPI0002763134	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr1:-:2765227..2774729

Molecular Weight (calculated)

36370.3 Da

IEP (calculated)

8.924

GRAVY (calculated)

-0.447

Length

327 amino acids

Sequence
(BLAST)

001: MADVSAMTDT STDVDTDDKN LRYLNSLTLG ATSDASDKTR DQKTLRRLSQ NREAARKSRL RKKAYVQQLE SSRMKLTQLE QELQRARQQG IYVSSSGDQS
101: QAMSGNGALA FDVEYARWLE EHNRRTNELR GAVSSHAGDG ELRIIVDGIL AHYDELFKIK ADAAKADVFH ILSGMWKTPA ERCFLWLGGF RSSELLKLLI
201: NQLEPLTDQQ SLAINNLQQS SQLAEDALSQ GIESLQQSLA ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFILQA DNLRQRMLQQ MHRILTTRQS
301: ARALLAIGDY FARLRALSSL WLARPRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.