Factsheet for Zm00001d028936_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003927_P001
Zm00001d004966_P001
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d011878_P001
Zm00001d012553_P003
Zm00001d016593_P001
Zm00001d022542_P002
Zm00001d023246_P001
Zm00001d028936_P001
Zm00001d039469_P001
Zm00001d042111_P001
Zm00001d043153_P001
Zm00001d052468_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10659709
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10662863
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	12383081
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	15634206
AT5G06960.1	Zm00001d004966_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d011878_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d023246_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d042111_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d052468_P002	AT2G41370.1	21798944
AT5G06960.1	Zm00001d003927_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d016593_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	17098811
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	17098811
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39494	Sorghum	nucleus	73.66	85.97
Os03t0318600-01	Rice	nucleus	71.36	83.78
TraesCS4D01G180200.4	Wheat	nucleus	71.1	82.99
TraesCS4A01G126300.2	Wheat	nucleus	71.1	82.99
TraesCS4B01G178600.1	Wheat	nucleus	70.59	82.63
HORVU4Hr1G052330.3	Barley	nucleus	70.59	82.63
Zm00001d022542_P002	Maize	nucleus	67.77	79.58
KRH36324	Soybean	nucleus	63.94	75.3
Solyc11g064950.1.1	Tomato	nucleus	61.89	74.69
PGSC0003DMT400024428	Potato	nucleus	61.89	74.69
PGSC0003DMT400026710	Potato	mitochondrion	32.23	71.59
AT5G06950.5	Thale cress	nucleus	59.08	70.0
Solyc01g008730.2.1	Tomato	nucleus	58.06	69.42
CDY08443	Canola	nucleus	58.06	68.58
Bra034767.1-P	Field mustard	nucleus	58.06	68.58
Bra009241.1-P	Field mustard	nucleus	53.96	68.06
Bra001443.1-P	Field mustard	nucleus	57.29	67.67
CDY00762	Canola	nucleus	57.29	67.67
CDX73830	Canola	nucleus	57.29	67.67
CDX98971	Canola	nucleus	56.27	67.07
CDY50562	Canola	nucleus	57.29	67.07
Bra038705.1-P	Field mustard	nucleus	57.29	67.07
CDX70053	Canola	nucleus	56.01	66.97
CDY52616	Canola	nucleus	57.03	66.97
CDY05010	Canola	nucleus	54.73	65.64
AT5G06960.1	Thale cress	nucleus	55.24	65.45
CDY14061	Canola	nucleus	54.48	65.34
Bra028713.1-P	Field mustard	nucleus	54.48	65.34
KRH66777	Soybean	nucleus	48.34	65.17
AT3G12250.4	Thale cress	nucleus	57.8	63.66
PGSC0003DMT400060922	Potato	nucleus	42.46	61.94
Solyc10g080780.1.1	Tomato	cytosol	42.2	61.34
CDY42138	Canola	nucleus	49.1	59.26
Zm00001d008225_P001	Maize	nucleus	62.4	58.1
VIT_08s0007g05170.t01	Wine grape	nucleus	64.19	55.65
KRG93068	Soybean	nucleus	63.17	55.63
PGSC0003DMT400060926	Potato	nucleus	60.61	54.73
VIT_13s0084g00660.t01	Wine grape	nucleus	65.47	54.58
Zm00001d010658_P001	Maize	nucleus	47.83	54.2
Solyc10g080770.1.1	Tomato	nucleus	60.61	52.67
KRH20680	Soybean	nucleus	63.17	52.67
KRG95103	Soybean	nucleus	60.36	51.42
Zm00001d023424_P001	Maize	nucleus	40.66	51.29
KRH66771	Soybean	nucleus	60.1	51.09
KRH13334	Soybean	nucleus	63.68	50.1
Zm00001d043153_P001	Maize	nucleus	50.13	46.45
Zm00001d016312_P001	Maize	cytosol	10.74	45.16
Zm00001d012553_P003	Maize	nucleus	54.22	45.11
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	38.11	43.95
GSMUA_Achr8P21670_001	Banana	nucleus	64.19	43.13
Zm00001d037317_P003	Maize	nucleus	45.78	41.44
Zm00001d015845_P001	Maize	cytosol	26.85	39.03
Zm00001d041428_P001	Maize	cytosol	14.58	36.54
Zm00001d026398_P006	Maize	nucleus	38.36	36.41
Zm00001d052543_P001	Maize	nucleus	44.5	35.8
Zm00001d024160_P003	Maize	nucleus	37.85	34.91
Zm00001d005143_P001	Maize	nucleus	36.32	34.55
Zm00001d020938_P002	Maize	nucleus	42.2	33.95
Zm00001d002143_P002	Maize	cytosol	36.32	32.35
Zm00001d006027_P002	Maize	nucleus	41.18	32.01
Zm00001d046751_P001	Maize	nucleus	35.04	29.91
Zm00001d012294_P009	Maize	nucleus	40.66	28.65
Zm00001d038296_P001	Maize	nucleus	37.85	28.52
Zm00001d042777_P006	Maize	nucleus	43.22	26.0
Zm00001d045823_P001	Maize	cytosol	15.09	19.54
Zm00001d015846_P001	Maize	nucleus	7.93	15.35

Protein Annotations

EntrezGene:100274089	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1D6K103	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	ProteinID:ONL97455.1
ProteinID:ONL97458.1	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF220
InterPro:TGA_domain	TMHMM:TMhelix	UniParc:UPI000844F842	EnsemblPlantsGene:Zm00001d028936	EnsemblPlants:Zm00001d028936_P001	EnsemblPlants:Zm00001d028936_T001
InterPro:bZIP	SEG:seg	:	:	:	:

Description

bZIP-transcription factor 52Transcription factor TGA6

Coordinates

chr1:-:52167612..52173614

Molecular Weight (calculated)

43959.8 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.297

Length

391 amino acids

Sequence
(BLAST)

001: MADASSRTDT STVLDMDDKN QRLENGQSGA MALASNSSDR SDRSDKPMDQ KVFLSHMSSV LRRLAQNREA ARKSRLRKKV LLAWLCTSGS YFYNFGAVCH
101: SLMHACLFIC YMPLLIFIVF KGICATTREQ QAKTCKPGAR TPESSTTGNL HIQFWRSNSC YEWKCKFISA GAMTFDLEYS RWQEEENKQI NELRTAVNAH
201: ASESDLRLIV DGIMAHYDEI FRLKGIAAKA DVFHILSGMW KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLMGLSN LQQSSQQAED ALSQGMEALQ
301: QSLAETLAGS LGPSGSSGNV ANYMGQMAMA MGKLGTLENF LRQADNLRQQ TLHQMQRILT IRQAARALLA IHDYFSRLRA LSSLWLARPR E

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.