Factsheet for Zm00001d042111_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001952_P001
Zm00001d026536_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	Zm00001d001952_P001	AT3G51180.1	21798944
AT2G41370.1	Zm00001d026536_P002	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88196	Sorghum	cytosol	94.49	94.67
Zm00001d011878_P001	Maize	cytosol	90.75	94.08
Os01t0948900-01	Rice	cytosol	59.84	90.21
TraesCS3D01G484100.1	Wheat	cytosol	86.42	85.91
TraesCS3A01G489000.1	Wheat	cytosol	86.61	85.6
TraesCS3B01G537400.1	Wheat	cytosol	86.42	85.41
HORVU3Hr1G106880.5	Barley	cytosol	86.02	85.19
GSMUA_Achr5P16220_001	Banana	cytosol	64.96	74.83
GSMUA_Achr11P...	Banana	cytosol	63.39	74.54
KRH72058	Soybean	cytosol	67.72	72.27
VIT_08s0007g05740.t01	Wine grape	cytosol	69.69	72.24
Solyc04g040220.2.1	Tomato	cytosol	65.35	71.24
PGSC0003DMT400027591	Potato	cytosol	64.37	70.93
CDY23854	Canola	cytosol	66.73	70.48
CDX79940	Canola	cytosol	43.9	70.35
KRH66789	Soybean	cytosol	67.32	70.23
Bra004617.1-P	Field mustard	cytosol	43.7	70.03
PGSC0003DMT400076710	Potato	cytosol	66.93	69.82
AT2G41370.1	Thale cress	cytosol	67.32	69.65
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	66.54	69.4
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	66.54	69.4
PGSC0003DMT400021076	Potato	cytosol	66.73	69.18
Solyc10g079750.1.1	Tomato	cytosol	66.14	68.85
AT3G57130.1	Thale cress	cytosol	62.99	68.52
Bra016938.1-P	Field mustard	cytosol	65.55	68.38
Solyc10g079460.1.1	Tomato	cytosol	66.34	68.22
Bra007306.1-P	Field mustard	cytosol	61.42	67.53
CDX72067	Canola	cytosol	61.42	67.39
CDY06130	Canola	cytosol	61.02	67.1
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	60.24	66.23
CDX76040	Canola	cytosol	37.8	65.98
Bra014645.1-P	Field mustard	cytosol	37.8	65.98
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	59.84	65.8
CDY35774	Canola	cytosol	37.2	64.95
CDY30971	Canola	cytosol	58.07	64.84
Zm00001d052468_P002	Maize	cytosol	59.25	63.91
Zm00001d023246_P001	Maize	cytosol	59.45	63.58
Zm00001d004966_P001	Maize	cytosol	57.68	61.95
Solyc05g018160.1.1	Tomato	cytosol	29.72	53.93
CDY33841	Canola	cytosol	9.45	48.48
Zm00001d034944_P004	Maize	cytosol	22.24	24.84
Zm00001d012660_P002	Maize	cytosol	26.57	21.74
Zm00001d039469_P001	Maize	cytosol	24.61	21.44
Zm00001d013581_P001	Maize	cytosol	1.97	4.98

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	UniProt:A0A1D6N1G2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR_central_dom	ProteinID:ONM34560.1	PFAM:PF00651
PFAM:PF11900	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695
UniParc:UPI0008430262	EnsemblPlantsGene:Zm00001d042111	EnsemblPlants:Zm00001d042111_P001	EnsemblPlants:Zm00001d042111_T001	SEG:seg	:

Description

tassels replace upper ears1 tassels replace upper ears1

Coordinates

chr3:+:151328862..151332856

Molecular Weight (calculated)

53628.4 Da

IEP (calculated)

6.472

GRAVY (calculated)

0.018

Length

508 amino acids

Sequence
(BLAST)

001: MEDTLKSLSM DYLNLLINGQ AFSDVTFSVE GRLVHAHRCI LAARSLFFRK FFCGAAAADQ AAAPGALLLD HLSPRSPSGG ASSSSPRGGA GGAGASAAAA
101: PGAVIPVNSV SYEVFLLLLQ FLYSGQVSLV PQKGDPRPGC GERACWHTHC AAAVDLALDT LAAARSFGVE ELALLTQKQL AGMVEKASIE DVMKVLMASR
201: KQDLHQLWTT CSHLVAKSGL PPEVLDKHLP IDVVAKIVEL RLKSSMSRRS PFLAHHHPHH HPAAGGMEAS SAADIDEHHK IRRMRRALDS SDVELVKLMV
301: MGEGLNLDEA LALHYAVENC SREVVKALLE LGAADVNHPA GPAGKTPLHV AAEMVCPDMV AVLLDHHADP NVRTVEGVTP LDILRTLTSD FLFKGAVPGL
401: AHVEPNKLRL CLELVQSAAM VMSREDAHTA VNPAAAPMYG EPSGGGAVYS ASGTSSSMVN LSLDNRMVYL NLGMDAQFGK MDDGGDGDDG GGRGQGGPPS
501: LFSPHGYH

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.