CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	KRH28782	AT3G51180.1	21798944
AT2G41370.1	KRH28783	AT3G51180.1	21798944
AT2G41370.1	KRH69800	AT3G51180.1	21798944
AT2G41370.1	KRH69802	AT3G51180.1	21798944
AT2G41370.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95113	Soybean	cytosol	63.66	87.07
KRH66789	Soybean	cytosol	83.4	81.52
VIT_08s0007g05740.t01	Wine grape	cytosol	83.82	81.43
PGSC0003DMT400027591	Potato	cytosol	75.21	77.66
CDX79940	Canola	cytosol	51.68	77.6
AT2G41370.1	Thale cress	cytosol	79.83	77.39
Bra004617.1-P	Field mustard	cytosol	51.47	77.29
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	78.99	77.21
CDY23854	Canola	cytosol	77.94	77.13
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	78.78	77.0
AT3G57130.1	Thale cress	cytosol	75.0	76.45
Bra016938.1-P	Field mustard	cytosol	77.73	75.98
Solyc04g040220.2.1	Tomato	cytosol	74.37	75.97
GSMUA_Achr5P16220_001	Banana	cytosol	68.91	74.38
CDY06130	Canola	cytosol	72.06	74.24
Bra007306.1-P	Field mustard	cytosol	72.06	74.24
CDX72067	Canola	cytosol	72.06	74.08
CDX76040	Canola	cytosol	44.96	73.54
Bra014645.1-P	Field mustard	cytosol	44.75	73.2
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	70.59	72.73
Solyc10g079750.1.1	Tomato	cytosol	74.37	72.54
CDY35774	Canola	cytosol	44.33	72.51
PGSC0003DMT400076710	Potato	cytosol	74.16	72.48
GSMUA_Achr11P...	Banana	cytosol	65.76	72.45
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	70.17	72.29
CDY30971	Canola	cytosol	68.28	71.43
PGSC0003DMT400021076	Potato	cytosol	73.53	71.43
GSMUA_AchrUn_...	Banana	cytosol	62.4	70.88
GSMUA_Achr5P08160_001	Banana	cytosol	63.24	70.49
Solyc10g079460.1.1	Tomato	cytosol	72.69	70.04
GSMUA_Achr3P08710_001	Banana	cytosol	62.6	69.95
Zm00001d011878_P001	Maize	cytosol	71.01	68.98
GSMUA_Achr8P22070_001	Banana	cytosol	59.87	68.67
OQU88196	Sorghum	cytosol	72.27	67.85
Zm00001d042111_P001	Maize	cytosol	72.27	67.72
Os01t0948900-01	Rice	cytosol	47.48	67.06
TraesCS3A01G489000.1	Wheat	cytosol	71.85	66.54
TraesCS3D01G484100.1	Wheat	cytosol	71.22	66.34
TraesCS3B01G537400.1	Wheat	cytosol	71.43	66.15
HORVU3Hr1G106880.5	Barley	cytosol	71.01	65.89
GSMUA_AchrUn_...	Banana	cytosol	59.66	63.39
Zm00001d023246_P001	Maize	cytosol	60.08	60.21
EES16520	Sorghum	cytosol	60.5	60.0
Zm00001d052468_P002	Maize	cytosol	59.24	59.87
Os11t0141900-00	Rice	cytosol	61.97	59.72
Zm00001d004966_P001	Maize	cytosol	59.24	59.62
TraesCS5A01G134700.2	Wheat	cytosol	61.34	59.23
TraesCS5B01G133700.1	Wheat	cytosol	61.34	59.23
TraesCS5D01G139600.1	Wheat	cytosol	61.34	59.23
EES09234	Sorghum	cytosol	60.08	59.09
Os12t0138500-01	Rice	cytosol	39.71	58.15
Solyc05g018160.1.1	Tomato	cytosol	32.98	56.07
KRH73603	Soybean	cytosol, plastid	28.78	23.22
KRH37416	Soybean	cytosol	27.73	22.68
KRH14520	Soybean	cytosol, plastid	27.94	22.54
KRH36735	Soybean	cytosol, plastid	27.31	22.03
KRH11740	Soybean	plastid	26.89	21.69

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100811388	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	EMBL:ACUP02001159	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	EnsemblPlantsGene:GLYMA_02G188700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009864	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K7K9F0	EnsemblPlants:KRH72058
ProteinID:KRH72058	ProteinID:KRH72058.1	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI0002336FF5	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:35184116..35187846

Molecular Weight (calculated)

51973.2 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.200

Length

476 amino acids

Sequence
(BLAST)

001: MSQEESQRSL SMDYLNLLIN GQAFSDVTFQ VEGRLVHGHR CILAARSLFF RKFFCGPDPP TGLDPAGASR SNDTGAAARP PGVIPVNSVG YEVFLLLLQF
101: LYSGQVSIVP QKHEARPNCG ERGCWHTHCT SAVDLALDTL AAARYFGVEQ LALLTQKQLA SMVEKASIDD VMKVLIASRK QEMQQLWSTC SHLVAKSGLP
201: PEVLAKHLPI DVVAKIEELR LKSSLARRSL LPGHHQHHHD LTPGMEDQKI QRMRRALDSS DVELVKLMVM GEGLNLDEAL ALHYAVENCS REVVKALLEL
301: GAADVNFPAG PAGKTPLHVA AEMVLPEMVA VLLDHHADPN VRTVEGVTPL DILRTLTSDF LFRGAVPGLT HIEPNKLRLC LELVQSAALV LSREEGNNVN
401: NDHNNNASAS ATAIYPPMSS EDHSSGNSDS RLVYLNLGAT PPMGEDDGSQ REAMNRHGSQ GGRCDPPSMY HHSHDF

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.