CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG97711
KRH11775
KRH14933
KRH31163
KRH36781
KRH43001
KRH56614
KRH59117
KRH72037
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	KRH11775	AT2G34710.1	21798944
AT3G51180.1	KRH36781	AT2G34710.1	21798944
AT3G51180.1	KRH43001	AT2G34710.1	21798944
AT3G51180.1	KRH59117	AT2G34710.1	21798944
AT3G51180.1	KRG97711	AT3G08530.1	21798944
AT3G51180.1	KRH14933	AT3G08530.1	21798944
AT3G51180.1	KRH31163	AT3G08530.1	21798944
AT3G51180.1	KRH73205	AT3G08530.1	21798944
AT3G51180.1	KRG93305	AT3G27960.1	21798944
AT3G51180.1	KRH56614	AT3G27960.1	21798944
AT3G51180.1	KRH72037	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69800	Soybean	plastid	69.07	70.81
KRH28782	Soybean	cytosol, nucleus, plastid	36.73	42.39
KRH76672	Soybean	nucleus	26.89	39.33
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	25.66	35.87
Bra012068.1-P	Field mustard	cytosol	10.9	34.44
KRH28783	Soybean	nucleus	20.56	33.52
KRH61063	Soybean	nucleus	24.43	32.33
Solyc02g084080.1.1	Tomato	cytosol	6.85	31.45
GSMUA_Achr1P19920_001	Banana	cytosol	24.43	31.17
EES13033	Sorghum	mitochondrion	24.43	30.89
Zm00001d001952_P001	Maize	mitochondrion	24.43	30.75
AT5G66270.1	Thale cress	cytosol	24.25	30.73
GSMUA_Achr3P11230_001	Banana	cytosol	24.78	30.45
CDY45225	Canola	cytosol, nucleus, plastid	21.79	30.32
Solyc02g038790.1.1	Tomato	cytosol	10.54	29.85
CDY67080	Canola	cytosol, nucleus, plastid	20.04	28.79
Zm00001d026536_P002	Maize	nucleus	24.08	28.66
HORVU2Hr1G109820.1	Barley	mitochondrion	25.66	27.65
CDX73744	Canola	mitochondrion, nucleus	23.9	27.25
TraesCS2B01G520300.1	Wheat	mitochondrion	24.96	26.54
TraesCS2A01G492200.1	Wheat	mitochondrion	25.83	26.49
CDX77980	Canola	mitochondrion, nucleus, plastid	21.97	26.48
VIT_04s0023g03180.t01	Wine grape	cytosol	33.04	26.4
TraesCS2D01G492400.1	Wheat	mitochondrion	25.31	25.99
AT3G51180.1	Thale cress	nucleus	23.2	25.34
Os04t0663200-01	Rice	cytosol	17.05	24.68
Bra036832.1-P	Field mustard	nucleus	20.91	23.99
HORVU2Hr1G109740.2	Barley	plastid	25.83	23.79
PGSC0003DMT400009146	Potato	nucleus	23.55	22.15
Solyc02g084160.1.1	Tomato	cytosol	6.15	22.01
Solyc02g084200.1.1	Tomato	nucleus	22.85	21.89
Solyc02g084110.1.1	Tomato	cytosol	5.27	19.74
PGSC0003DMT400092162	Potato	nucleus	18.28	18.54
PGSC0003DMT400009142	Potato	plasma membrane	17.22	18.15

Protein Annotations

EMBL:ACUP02000729	EnsemblPlants:KRH69802	EnsemblPlantsGene:GLYMA_02G049700	EntrezGene:102661587	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF5	PFscan:PS50103
ProteinID:KRH69802	ProteinID:KRH69802.1	SEG:seg	UniParc:UPI0002949F4A	UniProt:K7K6H9	MapMan:15.5.16

Description

hypothetical protein

Coordinates

chr2:-:4511302..4519700

Molecular Weight (calculated)

61164.4 Da

IEP (calculated)

8.041

GRAVY (calculated)

-0.372

Length

569 amino acids

Sequence
(BLAST)

001: MKRARKSNRV SWATGENLCQ VKLFLSDDYP SIVGQKSQDH LQAKTSSMLH SSINEPNDLP PGFESSHFLN QPKVELSNIP LIKWECPPLV VVRSQWRVAA
101: GEESREKENQ KLREMRVLEA LYPRLSAIPP SPSVSLDVEE EDYDDGITPL IPIIPIEEEE SMDILPELAV ALKPSPNVQS QNSPQYISAK TSISSASNAS
201: PAVSHDPCVR PLAEADLAAA SSVVATIIRS NEQGTLIDMD LLGKIFTDPK ILEQLINEHR TAATTTSASS KTVDIPTSGQ KPAIPSVLLS TSTPDVTASG
301: TTPTSAVSSL PSGFWLKPSN PSVSLLNPTP CKTPTLSVPA IPSFSLLSST HDQPVTASVP LSRPVSGKPV TPSVSLLTHT PALDMHRPVS KNFHVSSGMP
401: PALNSQSQQE TALASGPKRA ASLASIPYSQ LSSGPLPSAA GNLRATINQA QSAATTMPYK LSTCSSAFAV KDANYYKNLI RQHGADKQDI QDSHIGIRHS
501: NFQDMKPVHN IKQGEVKHKI QKPCIYFKSP RGCRNGSNCP YQHDVSDQWG AGNVLGAQSA KRLKLGGDN

Best Arabidopsis Sequence Match ( AT5G66270.1 )
(BLAST)

001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS

Arabidopsis Description

Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.