Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 93.32 | 96.64 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 96.39 | 96.22 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 80.14 | 84.09 |
| HORVU2Hr1G109740.2 | Barley | plastid | 77.98 | 69.9 |
| EES13033 | Sorghum | mitochondrion | 48.38 | 59.56 |
| Zm00001d001952_P001 | Maize | mitochondrion | 46.57 | 57.08 |
| Zm00001d026536_P002 | Maize | nucleus | 45.85 | 53.14 |
| Os04t0663200-01 | Rice | cytosol | 36.64 | 51.65 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 33.39 | 41.48 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 32.13 | 38.95 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 32.31 | 38.66 |
| CDY62587 | Canola | mitochondrion, nucleus | 27.62 | 37.5 |
| Bra016491.1-P | Field mustard | nucleus | 26.71 | 37.28 |
| Bra025776.1-P | Field mustard | extracellular | 26.9 | 37.16 |
| CDY29391 | Canola | extracellular | 26.9 | 37.16 |
| CDY39347 | Canola | mitochondrion | 27.98 | 36.82 |
| AT1G19860.2 | Thale cress | nucleus | 27.44 | 36.63 |
| CDX83740 | Canola | nucleus | 25.99 | 36.36 |
| KRH61063 | Soybean | nucleus | 27.8 | 35.81 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 26.17 | 35.63 |
| PGSC0003DMT400075650 | Potato | nucleus | 30.69 | 34.76 |
| Solyc12g089260.1.1 | Tomato | nucleus | 30.32 | 34.43 |
| Bra012068.1-P | Field mustard | cytosol | 11.01 | 33.89 |
| KRH28783 | Soybean | nucleus | 19.13 | 30.37 |
| Solyc02g084080.1.1 | Tomato | cytosol | 6.68 | 29.84 |
| KRH69800 | Soybean | plastid | 26.53 | 26.49 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 22.92 | 25.76 |
| KRH69802 | Soybean | mitochondrion | 25.99 | 25.31 |
| Solyc02g038790.1.1 | Tomato | cytosol | 9.03 | 24.88 |
| AT5G66270.1 | Thale cress | cytosol | 19.68 | 24.28 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 17.15 | 23.99 |
| AT3G51180.1 | Thale cress | nucleus | 22.2 | 23.61 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 16.79 | 22.74 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 18.77 | 22.03 |
| CDX73744 | Canola | mitochondrion, nucleus | 19.68 | 21.84 |
| KRH76672 | Soybean | nucleus | 14.8 | 21.08 |
| Bra036832.1-P | Field mustard | nucleus | 18.59 | 20.77 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 25.45 | 19.8 |
| Solyc02g084160.1.1 | Tomato | cytosol | 5.6 | 19.5 |
| PGSC0003DMT400009146 | Potato | nucleus | 20.76 | 19.01 |
| Solyc02g084200.1.1 | Tomato | nucleus | 19.68 | 18.35 |
| PGSC0003DMT400092162 | Potato | nucleus | 15.7 | 15.51 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 13.36 | 13.7 |
| Solyc02g084110.1.1 | Tomato | cytosol | 3.43 | 12.5 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G492400.1 | EnsemblPlantsGene:TraesCS2D01G492400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | SEG:seg | MapMan:15.5.16 |
Description
No Description!
Coordinates
chr2D:+:590157143..590162453
Molecular Weight (calculated)
59645.0 Da
IEP (calculated)
7.479
GRAVY (calculated)
-0.741
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRRSRRVS WATGPSLCKV RLFISEDSPS QAGLRPQDNL QAKGSASLMH AASPSSDDSL PPGFESLQPT NDLKIDISQI PLIRWKCPPH ILLNPNWHLA
101: SGEESREIAV QNERMFGVLE AIYPRASNIP PNPFVSPDVK DSHYDDSGTP LVPVIPVEDD DASDQSEGPL LDQPNDYHQF DNYGPAEING LQVSNTPITP
201: AQQQPGGSTG VEADVLAAAS AAYTAIMQSN QKGSMVDRDL LVKILSDPVQ VERLMKEYNQ IRNEQSTSSS VVAPMPPCPP PQMTMTAPAS YSNHMTTFQN
301: TNSTLPPPSP MAPLPMMNRP PQGYPPVPMN HPPGSSPAMN LPPAAMNHRP GSNPPMSHPP GSNPPMSRPP GSNPPMSRPP GSNPPMSRPP GSNPAMSHPP
401: GSNPAMSHPL GSNPAMSHAP GSNPAMSYPP GSSSPAMNFS GAPPRAINYY KTLIHQHGGE RQESFEQHGR QFGMYHQSVP PQTNGIDAMN GASMVNRDTK
501: TRPTRPCAYF NGPRGCRNGA NCTFLHDSSA TSRQQEQQNG SKRIKLDSRI TGRN
101: SGEESREIAV QNERMFGVLE AIYPRASNIP PNPFVSPDVK DSHYDDSGTP LVPVIPVEDD DASDQSEGPL LDQPNDYHQF DNYGPAEING LQVSNTPITP
201: AQQQPGGSTG VEADVLAAAS AAYTAIMQSN QKGSMVDRDL LVKILSDPVQ VERLMKEYNQ IRNEQSTSSS VVAPMPPCPP PQMTMTAPAS YSNHMTTFQN
301: TNSTLPPPSP MAPLPMMNRP PQGYPPVPMN HPPGSSPAMN LPPAAMNHRP GSNPPMSHPP GSNPPMSRPP GSNPPMSRPP GSNPPMSRPP GSNPAMSHPP
401: GSNPAMSHPL GSNPAMSHAP GSNPAMSYPP GSSSPAMNFS GAPPRAINYY KTLIHQHGGE RQESFEQHGR QFGMYHQSVP PQTNGIDAMN GASMVNRDTK
501: TRPTRPCAYF NGPRGCRNGA NCTFLHDSSA TSRQQEQQNG SKRIKLDSRI TGRN
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.