Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G136100.1 | Wheat | nucleus | 99.4 | 99.1 |
| Os12t0137100-01 | Rice | cytosol, nucleus, plastid | 72.59 | 82.53 |
| Os11t0140600-01 | Rice | cytosol | 73.49 | 79.22 |
| TraesCS5B01G135100.1 | Wheat | cytosol, nucleus, plastid | 69.88 | 76.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.16 | 72.63 |
| Zm00001d052458_P001 | Maize | extracellular | 60.54 | 67.91 |
| EES09228 | Sorghum | cytosol | 61.75 | 67.43 |
| GSMUA_Achr8P17120_001 | Banana | cytosol, plasma membrane, plastid | 56.63 | 67.38 |
| Solyc04g016400.2.1 | Tomato | cytosol | 48.8 | 66.94 |
| CDY56710 | Canola | cytosol, extracellular, plastid | 56.93 | 66.78 |
| KRH33201 | Soybean | endoplasmic reticulum | 56.93 | 66.55 |
| VIT_00s0252g00130.t01 | Wine grape | cytosol, plasma membrane, plastid | 54.22 | 65.22 |
| TraesCS4D01G127600.1 | Wheat | cytosol | 62.95 | 64.71 |
| PGSC0003DMT400033117 | Potato | cytosol | 49.7 | 64.2 |
| Bra034103.1-P | Field mustard | cytosol | 57.53 | 59.87 |
| CDY41334 | Canola | cytosol | 57.53 | 59.69 |
| CDY67472 | Canola | cytosol | 52.71 | 58.33 |
| Solyc10g079890.1.1 | Tomato | plastid | 58.13 | 56.76 |
| PGSC0003DMT400076703 | Potato | cytosol, plastid | 58.13 | 56.1 |
| AT5G04170.1 | Thale cress | cytosol | 57.83 | 54.24 |
| HORVU5Hr1G043650.2 | Barley | plastid | 62.05 | 53.51 |
| CDX70254 | Canola | cytosol | 55.12 | 50.14 |
| Bra009480.1-P | Field mustard | cytosol | 53.61 | 48.77 |
| AT3G10300.6 | Thale cress | cytosol | 51.51 | 45.36 |
| CDY41394 | Canola | mitochondrion | 55.12 | 45.3 |
| CDX80907 | Canola | cytosol | 54.52 | 44.8 |
| KRH72037 | Soybean | cytosol, plasma membrane, plastid | 34.94 | 44.79 |
| TraesCS7D01G133400.1 | Wheat | cytosol | 33.43 | 42.86 |
| Bra005797.1-P | Field mustard | cytosol | 51.81 | 41.85 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G142800.1 | EnsemblPlantsGene:TraesCS5D01G142800 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| PFAM:PF13202 | PFAM:PF13405 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | TIGR:cd16180 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:228773595..228776670
Molecular Weight (calculated)
34086.5 Da
IEP (calculated)
5.334
GRAVY (calculated)
-0.386
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYPYGGAG GGGGYGAPPP YGSSPAPSAP PYGDKPPKEG KASSPYYASP PQPYGASGGG GGYGAPPSTQ PQSYGGGYGA PPSSQPQSYG GGGYGAPPAG
101: QPQSYGGGGG YGAPPAGQSY GAPPPSSAPY GAPPPAAAPY GAAGGYGSPF AALVPSAFPP GTDPNVVACF QAADRDGSGT IDDKELQSAL SGYNQSFSLR
201: TVHLLMYLFT NTNVRRIGPK EFTSVFYSLQ NWRSIFERFD RDRSGKIDAS ELRDALLSLG YSVSPTVLDL LVSKFDKTGG MSKAVEYDNF IECCLTVKGL
301: TEKFKEKDTA YSGSATFSYE AFMLTVLPFI IA
101: QPQSYGGGGG YGAPPAGQSY GAPPPSSAPY GAPPPAAAPY GAAGGYGSPF AALVPSAFPP GTDPNVVACF QAADRDGSGT IDDKELQSAL SGYNQSFSLR
201: TVHLLMYLFT NTNVRRIGPK EFTSVFYSLQ NWRSIFERFD RDRSGKIDAS ELRDALLSLG YSVSPTVLDL LVSKFDKTGG MSKAVEYDNF IECCLTVKGL
301: TEKFKEKDTA YSGSATFSYE AFMLTVLPFI IA
001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA
Arabidopsis Description
Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.