Factsheet for Bra009480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	35.62	72.63
AT5G04170.1	Thale cress	cytosol	68.22	70.34
Solyc04g016400.2.1	Tomato	cytosol	46.58	70.25
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	51.51	68.12
Bra034103.1-P	Field mustard	cytosol	58.36	66.77
Zm00001d052458_P001	Maize	extracellular	53.42	65.88
PGSC0003DMT400033117	Potato	cytosol	46.3	65.76
CDX80907	Canola	cytosol	71.51	64.6
EES09228	Sorghum	cytosol	53.42	64.14
CDX70254	Canola	cytosol	63.84	63.84
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	48.77	63.8
Os12t0137100-01	Rice	cytosol, nucleus, plastid	50.96	63.7
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	50.68	61.06
Os11t0140600-01	Rice	cytosol	51.23	60.71
Solyc10g079890.1.1	Tomato	plastid	53.7	57.65
CDY41394	Canola	mitochondrion	63.56	57.43
Bra005797.1-P	Field mustard	cytosol	64.38	57.18
PGSC0003DMT400076703	Potato	cytosol, plastid	53.7	56.98
TraesCS4D01G127600.1	Wheat	cytosol	50.14	56.66
TraesCS4B01G132800.1	Wheat	nucleus	50.68	56.4
TraesCS4A01G186100.1	Wheat	golgi	50.14	56.31
TraesCS5D01G142800.1	Wheat	nucleus	48.77	53.61
TraesCS5A01G136100.1	Wheat	nucleus	48.49	53.15
HORVU5Hr1G043650.2	Barley	plastid	52.05	49.35
HORVU4Hr1G026030.9	Barley	cytosol	43.56	48.62
KRH72037	Soybean	cytosol, plasma membrane, plastid	31.23	44.02
Bra000510.1-P	Field mustard	cytosol	22.74	37.22

Protein Annotations

EnsemblPlants:Bra009480.1	EnsemblPlants:Bra009480.1-P	EnsemblPlantsGene:Bra009480	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	PFAM:PF13202	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002547A58	UniProt:M4CZ33	MapMan:35.1	:	:

Description

AT5G04170 (E=3e-099) | calcium-binding EF hand family protein

Coordinates

chrA10:-:16859546..16861250

Molecular Weight (calculated)

38110.0 Da

IEP (calculated)

5.858

GRAVY (calculated)

-0.529

Length

365 amino acids

Sequence
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS STGNNPPTNQ GYGYGGGNNP PYGSSSPYAV PYGASKPQSS SAPSAPPYAP SPPPGDFNPP KEKPFGGGYG
101: ASPPSAPYGS AEAPRPGGYG AAPPHSEYGG YGAAPRPYGG YGAAAPPSGV PEYGGYGGAP PRPGGGGYGG YPSPQGSSYG SPFASLVPSG FAPGTDPNIV
201: ACFQAADQDG SGFIDDKELQ GALSSYQQRF SMRTVHLLMY LFTNTNAMKI GPKEFTALFY SLQNWRSIFE RSDKDRSGRI DVSELRDALL SLGFSVSPVI
301: LDLLVSKFDK SGGKNRAIEY DNFIECCLTV KGLTEKFKEK DTGYSGSATF TYESFMLTVL PFLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.