CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G04170.1	Thale cress	cytosol	67.08	76.55
GSMUA_AchrUn_...	Banana	cytosol	31.93	72.07
CDY56710	Canola	cytosol, extracellular, plastid	50.25	71.73
Bra009480.1-P	Field mustard	cytosol	64.6	71.51
CDY67472	Canola	cytosol	50.49	68.0
CDY41334	Canola	cytosol	53.22	67.19
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	45.79	67.03
Solyc04g016400.2.1	Tomato	cytosol	39.36	65.7
EES09228	Sorghum	cytosol	49.01	65.13
Zm00001d052458_P001	Maize	extracellular	47.28	64.53
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	44.06	63.8
Os12t0137100-01	Rice	cytosol, nucleus, plastid	46.04	63.7
PGSC0003DMT400033117	Potato	cytosol	40.1	63.03
Os11t0140600-01	Rice	cytosol	47.28	62.01
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	46.04	61.39
CDX70254	Canola	cytosol	54.21	60.0
Solyc10g079890.1.1	Tomato	plastid	49.75	59.12
PGSC0003DMT400076703	Potato	cytosol, plastid	50.0	58.72
TraesCS4D01G127600.1	Wheat	cytosol	45.54	56.97
TraesCS4A01G186100.1	Wheat	golgi	45.54	56.62
TraesCS4B01G132800.1	Wheat	nucleus	45.79	56.4
TraesCS5D01G142800.1	Wheat	nucleus	44.8	54.52
TraesCS5A01G136100.1	Wheat	nucleus	44.8	54.35
CDY41394	Canola	mitochondrion	52.97	52.97
HORVU5Hr1G043650.2	Barley	plastid	45.79	48.05
HORVU4Hr1G026030.9	Barley	cytosol	38.61	47.71
KRH72037	Soybean	cytosol, plasma membrane, plastid	27.72	43.24
CDX83268	Canola	cytosol	21.04	38.12
CDY31179	Canola	cytosol	20.79	37.67

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078CVY2	EnsemblPlants:CDX80907	ProteinID:CDX80907	ProteinID:CDX80907.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00134312001	InterPro:IPR002048	PFAM:PF13202	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE0DC5	SEG:seg	:

Description

BnaC03g01610D

Coordinates

chrLK031823:+:735469..737879

Molecular Weight (calculated)

42586.4 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.477

Length

404 amino acids

Sequence
(BLAST)

001: MVCFWSSDWR LQEATQAMVN KEHPDSVTVE MSGYPPTSQG YGYGYVGGNQ PPPPYSSGGG SNPPYGSSAS SSPYAVPYGA PKPPSSSAPP SAPSYGAPPP
101: SAPYAPPSAP PYAPASSGDY KPPKEKPYGG YGAAPPPHEA SSYGAAPRPG YGPPPKHGPS DYGSYGAAPP RPAQSSYGAA PPQGVSEYGG YGAVPPPRPA
201: SSGHGGVYGG YTPPQGSYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS GFIDDKELQG ALSSCQQRFS MRTVHLLMYL FTNTNAMKIG PKEFTALFYS
301: LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVIL DLLVSKFDKS GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TGYSGSATFT YESFMLTVLP
401: FLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.