CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41334	Canola	cytosol	99.65	88.12
GSMUA_AchrUn_...	Banana	cytosol	47.35	74.86
Solyc04g016400.2.1	Tomato	cytosol	57.6	67.36
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	65.37	67.03
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	65.02	65.95
Os12t0137100-01	Rice	cytosol, nucleus, plastid	67.14	65.07
Os11t0140600-01	Rice	cytosol	68.9	63.31
EES09228	Sorghum	cytosol	67.84	63.16
PGSC0003DMT400033117	Potato	cytosol	57.24	63.03
Zm00001d052458_P001	Maize	extracellular	65.02	62.16
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	65.37	61.06
CDY67472	Canola	cytosol	63.25	59.67
TraesCS4D01G127600.1	Wheat	cytosol	66.78	58.51
TraesCS4B01G132800.1	Wheat	nucleus	67.49	58.23
TraesCS4A01G186100.1	Wheat	golgi	66.78	58.15
TraesCS5D01G142800.1	Wheat	nucleus	66.78	56.93
TraesCS5A01G136100.1	Wheat	nucleus	66.78	56.76
Solyc10g079890.1.1	Tomato	plastid	66.78	55.59
PGSC0003DMT400076703	Potato	cytosol, plastid	66.43	54.65
AT3G10300.6	Thale cress	cytosol	71.38	53.58
CDX70254	Canola	cytosol	68.55	53.15
CDX80907	Canola	cytosol	71.73	50.25
HORVU5Hr1G043650.2	Barley	plastid	65.72	48.31
CDY41394	Canola	mitochondrion	68.9	48.27
HORVU4Hr1G026030.9	Barley	cytosol	53.36	46.18
KRH72037	Soybean	cytosol, plasma membrane, plastid	40.28	44.02
CDX83268	Canola	cytosol	28.98	36.77
CDY31179	Canola	cytosol	28.98	36.77

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078J0Q4	UniProt:A0A078J0Q4	EnsemblPlants:CDY56710	ProteinID:CDY56710
ProteinID:CDY56710.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00019945001	InterPro:IPR002048	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE1DE9
SEG:seg	:	:	:	:	:

Description

BnaC01g38680DBnaC01g38680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Q4]

Coordinates

chrLK033513:-:31578..33224

Molecular Weight (calculated)

30186.2 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.387

Length

283 amino acids

Sequence
(BLAST)

001: MSGYPPSSQG YGYGAASPYA VPYGSQPPPS SAPYGAPPSA PYASPPGDHK PHKEKPQAAY GSPGGYGSSG GYGGYGAPPS GHGGGYGAPP PPQQAGYGSP
101: FASLVPSAFP PGTDPNIVTC FQAADRDQSG FIDDKELQGA LSSYNQSFSM RTVHLLMYLF TNSNVRKIGP KEFTSLFYSL QSWRSIFERF DKDRSGKIDT
201: NELRDALLSL GFSVSPVVLD LLVSKFDKSG GRNRAIEYDN FIECCLTVKG LTEKFKEKDT ALSGSATFNY EAFMLTVLPF LVA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.