Factsheet for PGSC0003DMT400033117

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016400.2.1	Tomato	cytosol	80.93	85.95
GSMUA_AchrUn_...	Banana	cytosol	50.58	72.63
KRH33201	Soybean	endoplasmic reticulum	68.48	61.97
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	66.15	61.59
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	66.54	61.29
Zm00001d052458_P001	Maize	extracellular	67.7	58.78
EES09228	Sorghum	cytosol	68.87	58.22
Os12t0137100-01	Rice	cytosol, nucleus, plastid	65.37	57.53
CDY56710	Canola	cytosol, extracellular, plastid	63.03	57.24
Os11t0140600-01	Rice	cytosol	67.32	56.17
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	65.76	55.78
PGSC0003DMT400076703	Potato	cytosol, plastid	74.32	55.52
Bra034103.1-P	Field mustard	cytosol	64.98	52.35
CDY41334	Canola	cytosol	64.98	52.19
CDY67472	Canola	cytosol	60.31	51.67
TraesCS4D01G127600.1	Wheat	cytosol	64.2	51.08
TraesCS4B01G132800.1	Wheat	nucleus	64.59	50.61
TraesCS4A01G186100.1	Wheat	golgi	63.42	50.15
TraesCS5D01G142800.1	Wheat	nucleus	64.2	49.7
TraesCS5A01G136100.1	Wheat	nucleus	64.2	49.55
AT5G04170.1	Thale cress	cytosol	64.59	46.89
CDX70254	Canola	cytosol	65.76	46.3
Bra009480.1-P	Field mustard	cytosol	65.76	46.3
HORVU5Hr1G043650.2	Barley	plastid	65.76	43.9
HORVU4Hr1G026030.9	Barley	cytosol	54.86	43.12
KRH72037	Soybean	cytosol, plasma membrane, plastid	42.8	42.47
CDY41394	Canola	mitochondrion	66.15	42.08
CDX80907	Canola	cytosol	63.03	40.1
AT3G10300.6	Thale cress	cytosol	56.42	38.46
Bra005797.1-P	Field mustard	cytosol	59.53	37.23
PGSC0003DMT400067730	Potato	cytosol, plastid	35.8	31.72

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102594927	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1AYM5	PFAM:PF00036
PFAM:PF13405	EnsemblPlantsGene:PGSC0003DMG400012715	PGSC:PGSC0003DMG400012715	EnsemblPlants:PGSC0003DMT400033117	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002958201	RefSeq:XP_006358010.1
SEG:seg	:	:	:	:	:

Description

Ef-hand calcium binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012715]

Coordinates

chr4:-:11065161..11070028

Molecular Weight (calculated)

28326.4 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.400

Length

257 amino acids

Sequence
(BLAST)

001: MSDYPHNPSG YGYGYQPPQS QPYSSAPYGG SAPVPYGAPP PQQVHSSPYG DLNKPPKDNT PSSGGYPGPY GSNPFSSLMP SIFPPGTDPN VMSCFQMADQ
101: DGSGFIDDKE LQKALSSYNQ SFGLRTVHLL MYLFTNTNIR KIGPKEFTAV FSSLQNWRAI FERFDKDRSG KIDSSELREA LHSLGYAVYG PVLELLVSKF
201: DKTGGMIKAI EYDNFIECCL TVKGLTEKFK EKDIAYSGSA TFTYDSFMLT ILPFLIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.