CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	43.33	72.63
Solyc04g016400.2.1	Tomato	cytosol	52.33	64.88
CDY56710	Canola	cytosol, extracellular, plastid	59.67	63.25
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	57.67	62.01
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	56.0	60.87
Os12t0137100-01	Rice	cytosol, nucleus, plastid	59.0	60.62
PGSC0003DMT400033117	Potato	cytosol	51.67	60.31
Zm00001d052458_P001	Maize	extracellular	58.0	58.78
AT5G04170.1	Thale cress	cytosol	68.67	58.19
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	58.67	58.09
EES09228	Sorghum	cytosol	58.67	57.89
Os11t0140600-01	Rice	cytosol	59.33	57.79
CDY41334	Canola	cytosol	60.0	56.25
CDX70254	Canola	cytosol	67.0	55.07
TraesCS5D01G142800.1	Wheat	nucleus	58.33	52.71
Solyc10g079890.1.1	Tomato	plastid	59.67	52.65
TraesCS5A01G136100.1	Wheat	nucleus	58.33	52.55
TraesCS4B01G132800.1	Wheat	nucleus	57.33	52.44
TraesCS4D01G127600.1	Wheat	cytosol	56.33	52.32
TraesCS4A01G186100.1	Wheat	golgi	56.67	52.31
Bra005797.1-P	Field mustard	cytosol	71.33	52.07
PGSC0003DMT400076703	Potato	cytosol, plastid	59.33	51.74
CDX80907	Canola	cytosol	68.0	50.49
CDY41394	Canola	mitochondrion	65.33	48.51
HORVU5Hr1G043650.2	Barley	plastid	57.0	44.42
HORVU4Hr1G026030.9	Barley	cytosol	47.33	43.43
KRH72037	Soybean	cytosol, plasma membrane, plastid	34.0	39.38
CDX83268	Canola	cytosol	27.0	36.32
CDY31179	Canola	cytosol	26.67	35.87

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078JPZ9	UniProt:A0A078JPZ9	EnsemblPlants:CDY67472	ProteinID:CDY67472
ProteinID:CDY67472.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00063635001	InterPro:IPR002048	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EF2267
SEG:seg	:	:	:	:	:

Description

BnaA03g55310DBnaA03g55310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPZ9]

Coordinates

chrLK036141:-:6843..9456

Molecular Weight (calculated)

33229.3 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.485

Length

300 amino acids

Sequence
(BLAST)

001: MVCFWFSDWR PQEVTQGLNV QQYDDRHCLR VQIPSRLRCQ VTLRRPPKEK PYGGYGDPPP HDPSGYGAAP RPGYGPPPKH GPSEYGRYGG APPPRPASSG
101: HGGYGGYPPP QGSYGSPFAS LIPSGFAPGT DPNIVACFQA ADQDGSGFID DKELQGALSS YQQRFSMRTV HLLMYLFTNT NAMKIGPKEF TALFYSLQNW
201: RSIFERSDKD RSGRIDVNEL RDALMSLGFS VSPVILDLLV SKFDKSGGKN RAIEYDNFIE CCLTVKGLTE KFKEKDTGYS GSATFTYESF MLTVLPFLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.