Factsheet for Bra005797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	32.12	73.74
CDY67472	Canola	cytosol	52.07	71.33
AT5G04170.1	Thale cress	cytosol	58.64	68.08
Bra009480.1-P	Field mustard	cytosol	57.18	64.38
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	43.07	64.13
Solyc04g016400.2.1	Tomato	cytosol	37.47	63.64
Bra034103.1-P	Field mustard	cytosol	48.91	63.01
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	42.34	62.37
Os12t0137100-01	Rice	cytosol, nucleus, plastid	43.31	60.96
EES09228	Sorghum	cytosol	44.77	60.53
Zm00001d052458_P001	Maize	extracellular	43.31	60.14
PGSC0003DMT400033117	Potato	cytosol	37.23	59.53
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	43.07	58.42
Os11t0140600-01	Rice	cytosol	43.55	58.12
Solyc10g079890.1.1	Tomato	plastid	46.23	55.88
PGSC0003DMT400076703	Potato	cytosol, plastid	46.47	55.52
TraesCS4D01G127600.1	Wheat	cytosol	42.34	53.87
TraesCS4A01G186100.1	Wheat	golgi	42.58	53.85
TraesCS4B01G132800.1	Wheat	nucleus	42.82	53.66
TraesCS5D01G142800.1	Wheat	nucleus	41.85	51.81
TraesCS5A01G136100.1	Wheat	nucleus	41.85	51.65
HORVU4Hr1G026030.9	Barley	cytosol	36.25	45.57
HORVU5Hr1G043650.2	Barley	plastid	42.09	44.94
KRH72037	Soybean	cytosol, plasma membrane, plastid	24.82	39.38
Bra000510.1-P	Field mustard	cytosol	20.44	37.67

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra005797	EnsemblPlants:Bra005797.1	EnsemblPlants:Bra005797.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
UniProt:M4CNK9	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000253FB99	SEG:seg	:

Description

AT5G04170 (E=1e-099) | calcium-binding EF hand family protein

Coordinates

chrA03:+:683850..686117

Molecular Weight (calculated)

43864.3 Da

IEP (calculated)

8.293

GRAVY (calculated)

-0.512

Length

411 amino acids

Sequence
(BLAST)

001: MVCFWFSDWR PQEVTQGLNV QQYDDRHCLR VQIPSRLRCQ VTLRRVKATV TVTAAVINPT HPPPPYSSGG GNNPPYGSST SSSPYAVPYG APKPPSSSAP
101: PSAPSYGAPP PSAPYAPPSA PPYAPASSGD YKPPKEKPYG GYGDPPPHDP SGYGAAPRPG YGPPPKHGPS EYGSYGATPP QGYGATPPQG YGAAPPQGYG
201: GAPPPRPASS GHGGYGGYPP PQGSYGSPFA SLIPSGFAPG TDPNIVACFQ AADQDGSGFI DDKELQGALS SYQQRFSMRT VHLLMYLFTN SNAMKIGPKE
301: FTALFYSLQN WRSIFERSDK DRSGRIDVNE LRDALMSLGF SVSPVILDLL VSKFDKSGGK NRAIEYDNFI ECCLTVKGLT EKFKDKDTGY SGSATFTYES
401: FMLTVLPFLI A

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.