Factsheet for HORVU4Hr1G026030.9

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052458_P001	Maize	extracellular	65.14	71.96
EES09228	Sorghum	cytosol	62.08	66.78
TraesCS4D01G127600.1	Wheat	cytosol	63.91	64.71
TraesCS4B01G132800.1	Wheat	nucleus	64.53	64.33
TraesCS4A01G186100.1	Wheat	golgi	63.3	63.69
GSMUA_AchrUn_...	Banana	cytosol	32.11	58.66
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	49.24	57.71
KRH33201	Soybean	endoplasmic reticulum	49.24	56.69
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	47.4	56.16
Solyc04g016400.2.1	Tomato	cytosol	41.28	55.79
PGSC0003DMT400033117	Potato	cytosol	43.12	54.86
CDY56710	Canola	cytosol, extracellular, plastid	46.18	53.36
Bra034103.1-P	Field mustard	cytosol	49.24	50.47
CDY41334	Canola	cytosol	49.24	50.31
PGSC0003DMT400076703	Potato	cytosol, plastid	51.99	49.42
Solyc10g079890.1.1	Tomato	plastid	51.38	49.41
HORVU5Hr1G043650.2	Barley	plastid	57.8	49.09
CDY67472	Canola	cytosol	43.43	47.33
AT5G04170.1	Thale cress	cytosol	48.62	44.92
CDX70254	Canola	cytosol	49.24	44.11
Bra009480.1-P	Field mustard	cytosol	48.62	43.56
AT3G10300.6	Thale cress	cytosol	46.79	40.58
CDY41394	Canola	mitochondrion	49.54	40.1
CDX80907	Canola	cytosol	47.71	38.61
Bra005797.1-P	Field mustard	cytosol	45.57	36.25
HORVU7Hr1G027810.6	Barley	cytosol	26.91	32.47
KRH72037	Soybean	cytosol, plasma membrane, plastid	25.69	32.43

Protein Annotations

EnsemblPlants:HORVU4Hr1G026030.9	EnsemblPlantsGene:HORVU4Hr1G026030	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372
PFAM:PF13202	PFAM:PF13405	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000B4755DE	UniProt:A0A287NLQ0	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:-:154662721..154666058

Molecular Weight (calculated)

34338.1 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.488

Length

327 amino acids

Sequence
(BLAST)

001: MAGYPPPPGS GYPYGAAGGY GAPPPSGQKP PKEGKTSSSS GPDPYHGAPP PQQPYGGGGG GGYGAPPSYG QKPPKEGKTS YSSGSDPYHG APPPQQPYGG
101: GGGGGYGQQP YGAQPPSSAA PYGGPPAAQP YAGGGAGGYG SPFAALVPST FPPGTDPNVV ACFQAADRDG SGMIDDKELQ SALSGYSSQS FSLRTVHLLM
201: YLFTNSNVRK IGPKEFTSVF YSLQNWRGIF ERFDRDRSGR IDAAELRDAL LDLGYSVSPT VLDLLVSKFD KTGGKNKAVE YDNFIECCLT VKVIPPNKLT
301: SFLHFMVVIW LNYLYNLPEL LWQGLTE

Best Arabidopsis Sequence Match ( AT3G10300.6 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KVCYFHGLGR HILMQFYHLN YSRLFLYNVS NVCYVLIKNN RRGSPRSSRR RIRRYQAQLF SITRTSCSLF YHSSSLE

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.