CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	47.54	75.42
Solyc04g016400.2.1	Tomato	cytosol	60.21	70.66
PGSC0003DMT400033117	Potato	cytosol	61.97	68.48
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	66.2	68.12
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	65.14	66.31
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	70.07	65.68
Os12t0137100-01	Rice	cytosol, nucleus, plastid	67.25	65.41
EES09228	Sorghum	cytosol	68.66	64.14
Os11t0140600-01	Rice	cytosol	68.66	63.31
Zm00001d052458_P001	Maize	extracellular	65.85	63.18
Solyc10g079890.1.1	Tomato	plastid	71.13	59.41
PGSC0003DMT400076703	Potato	cytosol, plastid	71.13	58.72
TraesCS4B01G132800.1	Wheat	nucleus	65.85	57.01
TraesCS4D01G127600.1	Wheat	cytosol	64.79	56.97
TraesCS5D01G142800.1	Wheat	nucleus	66.55	56.93
TraesCS5A01G136100.1	Wheat	nucleus	66.55	56.76
TraesCS4A01G186100.1	Wheat	golgi	64.79	56.62
KRH72037	Soybean	cytosol, plasma membrane, plastid	46.48	50.97
HORVU4Hr1G026030.9	Barley	cytosol	56.69	49.24
KRH26648	Soybean	cytosol, plastid	36.27	48.36
HORVU5Hr1G043650.2	Barley	plastid	65.49	48.31
KRH22671	Soybean	cytosol, plastid	35.56	46.33

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100787885	MapMan:35.1	EMBL:ACUP02006417	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_10G106400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004198	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1LA46	InterPro:IPR002048
EnsemblPlants:KRH33201	ProteinID:KRH33201	ProteinID:KRH33201.1	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00023CDDDD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:23998154..24003019

Molecular Weight (calculated)

30660.8 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.462

Length

284 amino acids

Sequence
(BLAST)

001: MSGYPNQPPS YSYGAPPPPQ PYGAHPPSQS YGAPPPSQSY GAPPPPQPYG APPPAQPYSA SPYAQPSAPY AAPYNKPPKN ESHSHGGGSS GGYPAPAYAS
101: PFASLVPSAF PPGTDPNVVA CFQMADQDGS GFIDDKEMQG ALSSYNQSFS LRTVHLLMYH FTNSNVKKIG PKEFTSLFYS LQNWRSIFER FDKDRSGKID
201: STELRDALLS LGYAVSPVVL DLLVSKFDKT GGKSKAIEYD NFIECCLTVK GLTDKFKEKD TAYSGSATFT YESFMLTVLP FLIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.