Factsheet for Solyc04g016400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033117	Potato	cytosol	85.95	80.93
GSMUA_AchrUn_...	Banana	cytosol	54.13	73.18
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	71.07	62.32
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	71.49	62.01
KRH33201	Soybean	endoplasmic reticulum	70.66	60.21
CDY56710	Canola	cytosol, extracellular, plastid	67.36	57.6
Os12t0137100-01	Rice	cytosol, nucleus, plastid	69.42	57.53
Zm00001d052458_P001	Maize	extracellular	69.42	56.76
EES09228	Sorghum	cytosol	70.25	55.92
Os11t0140600-01	Rice	cytosol	70.25	55.19
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	68.59	54.79
Solyc10g079890.1.1	Tomato	plastid	75.21	53.53
CDY67472	Canola	cytosol	64.88	52.33
CDY41334	Canola	cytosol	68.59	51.88
Bra034103.1-P	Field mustard	cytosol	68.18	51.72
TraesCS4D01G127600.1	Wheat	cytosol	68.59	51.39
TraesCS4B01G132800.1	Wheat	nucleus	69.01	50.91
TraesCS4A01G186100.1	Wheat	golgi	68.18	50.77
TraesCS5D01G142800.1	Wheat	nucleus	66.94	48.8
TraesCS5A01G136100.1	Wheat	nucleus	66.94	48.65
Bra009480.1-P	Field mustard	cytosol	70.25	46.58
CDX70254	Canola	cytosol	69.42	46.03
AT5G04170.1	Thale cress	cytosol	66.53	45.48
Solyc11g068460.1.1	Tomato	cytosol, plastid	45.45	44.18
CDY41394	Canola	mitochondrion	69.01	41.34
HORVU5Hr1G043650.2	Barley	plastid	65.7	41.3
HORVU4Hr1G026030.9	Barley	cytosol	55.79	41.28
KRH72037	Soybean	cytosol, plasma membrane, plastid	43.39	40.54
CDX80907	Canola	cytosol	65.7	39.36
AT3G10300.6	Thale cress	cytosol	60.33	38.73
Bra005797.1-P	Field mustard	cytosol	63.64	37.47

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004198	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR002048	UniProt:K4BQE0	PFAM:PF00036	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	EnsemblPlantsGene:Solyc04g016400.2
EnsemblPlants:Solyc04g016400.2.1	UniParc:UPI0002767168	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:7193372..7199049

Molecular Weight (calculated)

26869.8 Da

IEP (calculated)

6.115

GRAVY (calculated)

-0.398

Length

242 amino acids

Sequence
(BLAST)

001: MSGYPHNPSG YGYGQQPPPH SSTPYGGSAP VPPQQQVSSP YGDLNKPPKD NTPPYGSNPF SSLMPSIFPP GTDPTVMSCF QMADQDGSGF IDDKELQKAL
101: SSYNQSFGLR TVHLLMYLFT NTNIRKIGPK EFTAVFYSLQ NWRAIFERFD KDRSGKIDSS ELREALHSLG YAVYGPVLEL LVSKFDKTGG LNKAIEYDNF
201: IECCLTVKGL TEKFKEKDIT YSGSATFTYD SFMLTILPFL IA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.