Factsheet for Solyc11g068460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107350.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	Solyc01g107350.2.1	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067730	Potato	cytosol, plastid	79.52	68.28
VIT_06s0080g00450.t01	Wine grape	plastid	60.24	66.67
KRH26648	Soybean	cytosol, plastid	55.02	64.32
KRH22671	Soybean	cytosol, plastid	56.22	64.22
GSMUA_Achr3P22660_001	Banana	plastid	55.02	58.05
Zm00001d049940_P002	Maize	cytosol	52.21	50.58
Os08t0558100-01	Rice	cytosol	49.8	49.01
Bra000510.1-P	Field mustard	cytosol	43.37	48.43
TraesCS7A01G134000.1	Wheat	cytosol	49.8	48.25
EES14088	Sorghum	cytosol	52.21	48.15
CDX83268	Canola	cytosol	42.97	47.98
CDY31179	Canola	cytosol	42.57	47.53
TraesCS7D01G133400.1	Wheat	cytosol	49.4	47.49
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	41.77	45.61
Solyc04g016400.2.1	Tomato	cytosol	44.18	45.45
TraesCS7B01G035100.1	Wheat	cytosol	48.59	44.65
HORVU7Hr1G027810.6	Barley	cytosol	48.19	44.28
Solyc10g079890.1.1	Tomato	plastid	45.38	33.24

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004198	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR002048	UniProt:K4DA04	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	EnsemblPlantsGene:Solyc11g068460.1
EnsemblPlants:Solyc11g068460.1.1	UniParc:UPI000276A488	SEG:seg	:	:	:

Description

Probable calcium-binding protein CML48 [Source:Projected from Arabidopsis thaliana (AT2G27480) UniProtKB/Swiss-Prot;Acc:Q9ZQH1]

Coordinates

chr11:-:53180764..53184085

Molecular Weight (calculated)

28128.1 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.486

Length

249 amino acids

Sequence
(BLAST)

001: MSSSYGSRPS YSPSAPPLFD PNEPPIAHPY RPSSSTSYAN YSNYPHQAQP QTAGYGPGSG YYQNPPNYGS GFPPGTDPQV IQSFQMVDRD CSGFVEEKEL
101: QQALSSGYQR FSLRTIRLLI FLFKNPSEYF PRIGPKEFAA LWSCLGQWRA IFERFDRDRS GKIDATELRD ALYSLGYMVP PSVLEVLISR YTDGSGRRPE
201: LCFDSFVECG MVVKGLTEKF KEKDTRYTGS AKLTYDEFMA MILPFLVSY

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.