Factsheet for Solyc01g107350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g031430.1.1
Solyc03g114070.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49840.1	Solyc03g031430.1.1	AT1G21840.1	21798944
AT3G19540.1	Solyc03g114070.2.1	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066530	Potato	plastid	97.23	97.23
VIT_03s0091g00410.t01	Wine grape	plastid	85.11	84.21
KRG91072	Soybean	plastid	82.13	83.37
KRH35700	Soybean	plastid	81.7	83.12
CDY50147	Canola	mitochondrion	71.7	76.77
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	74.47	76.42
CDX95439	Canola	mitochondrion	70.64	76.32
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	49.36	75.57
Bra038214.1-P	Field mustard	mitochondrion, plastid	73.4	75.16
CDY46168	Canola	mitochondrion	72.13	74.34
CDY67693	Canola	mitochondrion	71.7	74.23
Bra022430.1-P	Field mustard	mitochondrion, plastid	74.04	74.2
AT3G19540.1	Thale cress	plastid	76.17	73.81
GSMUA_Achr4P32590_001	Banana	cytosol	70.64	73.45
GSMUA_Achr6P16820_001	Banana	cytosol	68.3	72.79
Os12t0581300-01	Rice	cytosol	24.26	72.15
GSMUA_Achr10P...	Banana	cytosol	59.15	71.47
Solyc04g078190.2.1	Tomato	nucleus, plastid	44.47	71.33
CDY16530	Canola	plastid	68.3	71.02
GSMUA_Achr7P00620_001	Banana	mitochondrion	61.49	71.01
GSMUA_Achr10P...	Banana	plastid	63.19	70.88
OQU79433	Sorghum	cytosol	67.02	70.16
CDY32838	Canola	plastid	67.66	69.89
TraesCS5B01G078600.2	Wheat	cytosol	63.83	69.77
Os03t0606100-01	Rice	cytosol	65.11	69.55
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	67.45	69.37
TraesCS4B01G077800.1	Wheat	cytosol	67.23	69.15
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	67.23	69.15
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	67.66	69.13
TraesCS5A01G072300.1	Wheat	cytosol	68.09	69.11
TraesCS5D01G085100.1	Wheat	cytosol	68.09	69.11
GSMUA_Achr6P24020_001	Banana	cytosol	58.51	68.58
AT1G49840.1	Thale cress	plastid	71.7	68.22
Bra014219.1-P	Field mustard	plastid	70.64	68.03
GSMUA_Achr2P21540_001	Banana	plastid	63.19	67.96
GSMUA_Achr2P13470_001	Banana	cytosol	62.77	67.2
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	68.51	67.08
TraesCS2D01G192800.1	Wheat	nucleus	70.64	65.61
EER91248	Sorghum	cytosol	64.89	65.31
TraesCS2B01G211900.1	Wheat	nucleus	70.64	65.23
TraesCS2A01G194900.1	Wheat	nucleus	70.43	65.16
Zm00001d030837_P001	Maize	cytosol, mitochondrion	65.74	64.64
Os07t0591100-01	Rice	nucleus	71.06	64.48
EER99634	Sorghum	nucleus	71.06	63.98
Zm00001d013746_P001	Maize	cytosol	62.55	63.5
OQU92347	Sorghum	mitochondrion, plastid	65.11	62.83
Zm00001d047324_P001	Maize	cytosol	63.62	61.02
Zm00001d006749_P001	Maize	cytosol	68.09	60.84
Zm00001d022006_P001	Maize	cytosol, plastid	70.0	59.07
HORVU4Hr1G013190.8	Barley	mitochondrion	61.91	57.62
Zm00001d016585_P002	Maize	extracellular, plasma membrane	30.0	55.73
Solyc03g051920.2.1	Tomato	cytosol	36.6	48.73
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	38.3	42.86
Solyc05g052860.2.1	Tomato	cytosol	39.79	42.21
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	33.4	42.09
Solyc07g022840.1.1	Tomato	cytosol	31.7	39.95
Solyc04g080220.2.1	Tomato	cytosol	32.77	39.79

Protein Annotations

EnsemblPlants:Solyc01g107350.2.1	EnsemblPlantsGene:Solyc01g107350.2	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1	PFAM:PF04788
SEG:seg	UniParc:UPI0002767C81	UniProt:K4B2V2	MapMan:27.4.5.3	:	:

Description

No Description!

Coordinates

chr1:-:94914416..94916939

Molecular Weight (calculated)

51283.3 Da

IEP (calculated)

9.746

GRAVY (calculated)

-0.340

Length

470 amino acids

Sequence
(BLAST)

001: MERKQGFFSA LKEEVVRGLS PGRSRARSPA RSGSPITSLL RRKKSNSSSN FAPNHEQLIS RSGSLRPLGE TLTPLMEGPD PDGGEVGDSK RVGSSLGHWM
101: KGQLSRTPSV ASTAFSKRSD LRLLLGVMGA PLAPVHVSST DPLPHLSIKD TPIETSSAQY ILQQYTAASG GQKLQSSIKN AYAMGKLKML ASEFETPTKV
201: VKSRNSARAA ESGGFVLWQM NPDMWYVELA VGGSKVHAGC NGKLVWRHTP WLGAHTAKGT VRPLRRALQG LDPRSTASMF TNARCIGEKK INGEDCFILK
301: LCADPHTLKA RSEGPAEIIR HVLFGYFSQK TGLLVHMEDS HLTRIQSNGA DAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGEM AMSHSKTRME
401: EAWTIEEVAF NIPGLSVDCF IPPADLKSGS ISEACELPQD ERGNSAISLA SHRAKVAALE KTHDSWKVEI

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.