CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES01631
EES04107
EES05544
EES09201
EES16322
OQU78227
OQU80845
OQU84434
OQU89743

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	EES01631	AT2G41100.1	17360592
AT1G27690.1	EES09201	AT2G41100.1	17360592
AT1G27690.1	EES16322	AT2G41100.1	17360592
AT1G27690.1	OQU78227	AT2G41100.1	17360592
AT1G27690.1	EES04107	AT3G07120.1	21798944
AT1G27690.1	OQU80845	AT3G07120.1	21798944
AT1G27690.1	OQU89743	AT3G07120.1	21798944
AT1G49840.1	OQU84434	AT1G21840.1	21798944
AT3G19540.1	EER88130	AT5G62880.1	21798944
AT3G19540.1	EES05544	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013746_P001	Maize	cytosol	88.87	89.63
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	81.8	83.59
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	80.51	82.28
TraesCS4B01G077800.1	Wheat	cytosol	80.09	81.84
Os03t0606100-01	Rice	cytosol	76.45	81.14
OQU79433	Sorghum	cytosol	73.88	76.84
VIT_03s0091g00410.t01	Wine grape	plastid	68.31	67.16
HORVU4Hr1G013190.8	Barley	mitochondrion	72.16	66.73
KRH35700	Soybean	plastid	65.31	66.02
KRG91072	Soybean	plastid	65.31	65.87
GSMUA_Achr7P00620_001	Banana	mitochondrion	57.39	65.85
PGSC0003DMT400066530	Potato	plastid	65.52	65.11
Solyc01g107350.2.1	Tomato	plastid	65.31	64.89
CDY50147	Canola	mitochondrion	59.96	63.78
VIT_18s0001g09450.t01	Wine grape	plastid	64.03	63.75
CDX95439	Canola	mitochondrion	59.31	63.68
PGSC0003DMT400055468	Potato	plastid	62.95	62.55
OQU92347	Sorghum	mitochondrion, plastid	64.24	61.6
KRH15430	Soybean	plastid	62.1	61.31
EER99634	Sorghum	nucleus	68.52	61.3
KRH05611	Soybean	plastid	62.31	61.13
CDY67693	Canola	mitochondrion	59.31	61.01
Bra038214.1-P	Field mustard	mitochondrion, plastid	59.96	61.0
CDY16530	Canola	plastid	58.46	60.4
CDY46168	Canola	mitochondrion	58.89	60.31
Bra022430.1-P	Field mustard	mitochondrion, plastid	60.17	59.91
AT3G19540.1	Thale cress	plastid	61.88	59.59
CDY32838	Canola	plastid	57.82	59.34
Bra014219.1-P	Field mustard	plastid	59.1	56.56
AT1G49840.1	Thale cress	plastid	59.53	56.28
AT1G27690.1	Thale cress	plastid	51.82	55.89
Solyc04g078190.2.1	Tomato	nucleus, plastid	34.48	54.95
CDY03939	Canola	cytosol	13.49	53.39
CDY67976	Canola	mitochondrion, plastid	50.96	46.94
CDX90103	Canola	mitochondrion, plastid	50.75	46.75
EER95445	Sorghum	cytosol	36.62	46.59
Bra010924.1-P	Field mustard	mitochondrion, plastid	52.46	45.88
EER95119	Sorghum	cytosol	41.11	43.34
OQU89854	Sorghum	cytosol	33.62	40.89
EES03659	Sorghum	cytosol	33.19	40.36
EES17962	Sorghum	cytosol, nucleus, plastid	36.19	35.58

Protein Annotations

EnsemblPlants:EER91248	EnsemblPlantsGene:SORBI_3001G170500	EntrezGene:8062523	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF20
PFAM:PF04788	ProteinID:EER91248	ProteinID:EER91248.1	RefSeq:XP_002464250.1	SEG:seg	unigene:Sbi.3043
UniParc:UPI0001A82223	UniProt:C5WT66	MapMan:27.4.5.3	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:14239166..14242287

Molecular Weight (calculated)

50285.2 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.225

Length

467 amino acids

Sequence
(BLAST)

001: MERRHGFFAA LREEVARGLS PARARRKSEA ADLAAAALRF AGVVGGGEML APLMEGPDPE PSDGESGGAC RGAARGRKEG WGHWVRGQFA RAPSSAVAAA
101: GAGALRNDLR MLLGVLGAPL APVHVCATEP LPHLSVKDTP IETSSAQYIL QQYLAASGGH KLLASLRNSY AMGKVRMVAT EFETGGRLTK NRNAGRGGEP
201: GRFVLWQMAP EMWYIELVVG GSKVHAGCNG KLVWRHTPWL GAHSATGPVR PLRRSLQGLD PLMTASMFAR ARCIGERKVN GEDCFILKLS TDTETLKARS
301: EGHAEIIRHV TFGYFSQRTG LLAHIEDSHL TRIQSAAGGD AVYWETTISS FMEDYRPVDG IMIAHSGRSA VTLFRFGEVA MSHTKTRMEE VWSIEEVAFN
401: VPGLSMDCFI PPTDIKSGSV GEAMELTHGE RSRAGPPQGY CAKVAALEKA EEDKVAWGGG TVLESHN

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.