CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71531
CDX74062
CDY05318
CDY22376
CDY24647
CDY32973
CDY43590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	CDX74062	AT3G07120.1	21798944
AT1G27690.1	CDY05318	AT3G07120.1	21798944
AT1G27690.1	CDY24647	AT3G07120.1	21798944
AT1G27690.1	CDX71531	AT5G42940.1	21798944
AT1G27690.1	CDY22376	AT5G42940.1	21798944
AT1G27690.1	CDY32973	AT5G42940.1	21798944
AT1G27690.1	CDY43590	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0581300-01	Rice	cytosol	51.69	38.61
Zm00001d016585_P002	Maize	extracellular, plasma membrane	50.85	23.72
AT1G27690.1	Thale cress	plastid	83.05	22.63
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	53.39	20.52
CDY67976	Canola	mitochondrion, plastid	87.29	20.32
CDX90103	Canola	mitochondrion, plastid	87.29	20.32
GSMUA_Achr10P...	Banana	cytosol	55.08	16.71
TraesCS5B01G078600.2	Wheat	cytosol	57.63	15.81
GSMUA_Achr7P00620_001	Banana	mitochondrion	53.39	15.48
KRH15430	Soybean	plastid	61.86	15.43
KRH05611	Soybean	plastid	61.86	15.34
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	59.32	15.28
GSMUA_Achr6P24020_001	Banana	cytosol	51.69	15.21
VIT_18s0001g09450.t01	Wine grape	plastid	59.32	14.93
CDY16530	Canola	plastid	56.78	14.82
OQU79433	Sorghum	cytosol	55.93	14.7
PGSC0003DMT400055468	Potato	plastid	58.47	14.68
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	56.78	14.57
Os03t0606100-01	Rice	cytosol	54.24	14.55
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	55.93	14.44
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	55.93	14.44
TraesCS4B01G077800.1	Wheat	cytosol	55.93	14.44
GSMUA_Achr2P21540_001	Banana	plastid	53.39	14.42
GSMUA_Achr10P...	Banana	plastid	50.85	14.32
GSMUA_Achr6P16820_001	Banana	cytosol	53.39	14.29
CDY32838	Canola	plastid	55.08	14.29
TraesCS5A01G072300.1	Wheat	cytosol	55.93	14.25
TraesCS5D01G085100.1	Wheat	cytosol	55.93	14.25
CDX95439	Canola	mitochondrion	52.54	14.25
GSMUA_Achr2P13470_001	Banana	cytosol	52.54	14.12
CDY50147	Canola	mitochondrion	52.54	14.12
CDY67693	Canola	mitochondrion	52.54	13.66
Zm00001d013746_P001	Maize	cytosol	53.39	13.61
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	55.08	13.54
EER91248	Sorghum	cytosol	53.39	13.49
CDY46168	Canola	mitochondrion	51.69	13.38
CDX81011	Canola	cytosol	41.53	13.32
CDY55767	Canola	cytosol	41.53	13.32
GSMUA_Achr4P32590_001	Banana	cytosol	50.85	13.27
OQU92347	Sorghum	mitochondrion, plastid	53.39	12.94
HORVU4Hr1G013190.8	Barley	mitochondrion	55.08	12.87
EER99634	Sorghum	nucleus	56.78	12.84
Zm00001d030837_P001	Maize	cytosol, mitochondrion	51.69	12.76
Zm00001d047324_P001	Maize	cytosol	52.54	12.65
TraesCS2D01G192800.1	Wheat	nucleus	54.24	12.65
TraesCS2B01G211900.1	Wheat	nucleus	54.24	12.57
Os07t0591100-01	Rice	nucleus	55.08	12.55
TraesCS2A01G194900.1	Wheat	nucleus	53.39	12.4
CDY68684	Canola	cytosol, mitochondrion	29.66	12.24
CDX87382	Canola	mitochondrion	42.37	11.99
CDX88540	Canola	mitochondrion	42.37	11.99
Zm00001d006749_P001	Maize	cytosol	52.54	11.79
Zm00001d022006_P001	Maize	cytosol, plastid	54.24	11.49
CDX76076	Canola	cytosol, nucleus, plastid	36.44	10.64
CDY02955	Canola	cytosol, nucleus, plastid	36.44	10.64
CDY27272	Canola	cytosol, nucleus, plastid	37.29	10.14
CDY53851	Canola	cytosol	29.66	9.49
CDY30758	Canola	cytosol	29.66	9.49
CDY49838	Canola	cytosol	29.66	9.49
CDY52160	Canola	cytosol	29.66	9.49
CDX68146	Canola	cytosol	29.66	9.26
CDX70123	Canola	cytosol	34.75	9.26
CDX98870	Canola	cytosol	34.75	9.23
CDY37259	Canola	cytosol	30.51	9.09
CDY46011	Canola	cytosol	30.51	9.09
CDX79318	Canola	cytosol	3.39	4.65
Solyc04g078190.2.1	Tomato	nucleus, plastid	4.24	1.71

Protein Annotations

EnsemblPlants:CDY03939	EnsemblPlantsGene:GSBRNA2T00117448001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF7	PFAM:PF04788
ProteinID:CDY03939	ProteinID:CDY03939.1	UniParc:UPI0004EDFAD3	MapMan:27.4.5.3	:	:

Description

BnaC07g11640D

Coordinates

chrLK031947:+:954698..955326

Molecular Weight (calculated)

13235.6 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.333

Length

118 amino acids

Sequence
(BLAST)

001: MDINMQPSLT RIQNIGGEAV YWETTINSYL EDYKPVEGIV IAHSGRSVAT LLRFGDVSSG YNTKTTMQEE WVIDEIAFNV PGLSMDCFIP PSDLRFDSHV
101: EHLSQGPKIK TLQQGSDR

Best Arabidopsis Sequence Match ( AT1G27690.1 )
(BLAST)

001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG

Arabidopsis Description

Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.