CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52160	Canola	cytosol	98.92	98.92
CDY53851	Canola	cytosol	93.5	93.5
CDY30758	Canola	cytosol	93.22	93.22
AT5G66740.1	Thale cress	cytosol	92.95	92.7
VIT_04s0023g01510.t01	Wine grape	cytosol	74.25	75.48
KRH28651	Soybean	cytosol	73.44	71.69
KRH76791	Soybean	cytosol	72.36	71.39
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	70.73	69.97
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	70.46	69.71
GSMUA_Achr4P27870_001	Banana	cytosol	61.25	59.47
CDY68684	Canola	cytosol, mitochondrion	44.72	57.69
GSMUA_Achr2P13560_001	Banana	cytosol	57.45	56.23
Zm00001d012676_P001	Maize	cytosol	56.91	54.97
TraesCS3A01G302500.1	Wheat	cytosol	56.91	54.69
TraesCS3B01G333900.1	Wheat	cytosol	56.91	54.55
TraesCS3D01G299300.1	Wheat	cytosol	56.64	54.43
OQU89854	Sorghum	cytosol	56.64	54.43
CDX68146	Canola	cytosol	55.28	53.97
EES03659	Sorghum	cytosol	56.1	53.91
CDY46011	Canola	cytosol	56.1	52.27
CDY37259	Canola	cytosol	56.1	52.27
Zm00001d043364_P001	Maize	mitochondrion	16.26	49.59
HORVU3Hr1G073950.2	Barley	plastid	57.18	48.84
CDX70123	Canola	cytosol	52.85	44.02
CDX98870	Canola	cytosol	52.85	43.92
CDY02955	Canola	cytosol, nucleus, plastid	43.9	40.1
CDY27272	Canola	cytosol, nucleus, plastid	46.61	39.63
CDX76076	Canola	cytosol, nucleus, plastid	43.36	39.6
CDY50147	Canola	mitochondrion	44.99	37.81
CDX95439	Canola	mitochondrion	44.17	37.47
CDY67693	Canola	mitochondrion	44.17	35.9
CDY46168	Canola	mitochondrion	44.17	35.75
CDY16530	Canola	plastid	42.28	34.51
CDY32838	Canola	plastid	41.73	33.85
CDX81011	Canola	cytosol	33.33	33.42
CDY55767	Canola	cytosol	33.33	33.42
CDX88540	Canola	mitochondrion	36.86	32.61
CDX87382	Canola	mitochondrion	36.86	32.61
CDX79318	Canola	cytosol	7.59	32.56
CDY03939	Canola	cytosol	9.49	29.66
CDX90103	Canola	mitochondrion, plastid	39.57	28.8
CDY67976	Canola	mitochondrion, plastid	39.57	28.8

Protein Annotations

EnsemblPlants:CDY49838	EnsemblPlantsGene:GSBRNA2T00093906001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF9	PFAM:PF04788
ProteinID:CDY49838	ProteinID:CDY49838.1	UniParc:UPI0004EC615D	UniProt:A0A078IL80	MapMan:27.4.5.3	:

Description

BnaC02g43970DBnaC02g43970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL80]

Coordinates

chrLK032863:+:729..2123

Molecular Weight (calculated)

41268.2 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.281

Length

369 amino acids

Sequence
(BLAST)

001: MRKLCPNVDR DDGLETVLEI PIPEELFSGM GNNVALRCQN MMTWMKAQTS DKLSQPLIAA RINELHFLLY LVGSPLIPLQ VQVGHSVHKP VKDSSIQAST
101: AKYIVQQYIA ATGGPAALNA VNSMCVIGQV KMTASEFHQG DDSNVNLKSN DEMGGFILWQ KDPDLWCLEL VVSGCKVICG SNGRLSWRHS SNQQTPSSTG
201: TPRPLRRFLQ GLDPRSTANM FLDATCIGEK IINGEDCFIL KLETSPAVRE AQSGPDFEII HHTIWGYFSQ RSGLLIQFED SRLLSMRTKE GDVFWETSAE
301: SVMDDYRYVD DVNIAHGGKT TVTVFRYGEA SANHRRQMTE KWRIEEVDFN IWGLSVDHFR PPANLLTGN

Best Arabidopsis Sequence Match ( AT5G66740.1 )
(BLAST)

001: MRKLCPNIDK DDGLETVLEV PIPEEMFSGM GNNVALRWQN MMTWMKAQTS DKWSQPLIAA RINELRFLLY LVGSPLIPLQ VQVGHSVHKP VKDCSIQAST
101: AKYIVQQYIA ATGGPQALNA VNSMCVTGQV KMTASEFHQG DDSGVNLKSN DEMGGFVLWQ KDPDLWCLEL VVSGCKVICG SNGRLSWRHS SNQQTPASTG
201: TPRPLRRFLQ GLDPRSTANL FLDATCIGEK IINGEDCFIL KLETSPAVRE AQSGPNFEII HHTIWGYFSQ RSGLLIQFED SRLLRMRTKE DEDVFWETSA
301: ESVMDDYRYV DNVNIAHGGK TSVTVFRYGE ASANHRRQMT EKWRIEEVDF NVWGLSVDHF LPPANLQIEK

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT5G66740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.