CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19540.1	CDY00332	AT5G62880.1	21798944
AT3G19540.1	CDY30738	AT5G62880.1	21798944
AT3G19540.1	CDY45748	AT5G62880.1	21798944
AT3G19540.1	CDY56740	AT5G62880.1	21798944
AT3G19540.1	CDY68200	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50147	Canola	mitochondrion	97.93	97.04
Bra038214.1-P	Field mustard	mitochondrion, plastid	97.7	92.59
CDY46168	Canola	mitochondrion	89.66	85.53
CDY67693	Canola	mitochondrion	89.2	85.46
AT3G19540.1	Thale cress	plastid	91.72	82.27
CDY16530	Canola	plastid	75.4	72.57
KRG91072	Soybean	plastid	75.86	71.27
KRH35700	Soybean	plastid	75.63	71.21
CDY32838	Canola	plastid	74.48	71.21
PGSC0003DMT400066530	Potato	plastid	76.55	70.85
Solyc01g107350.2.1	Tomato	plastid	76.32	70.64
VIT_03s0091g00410.t01	Wine grape	plastid	77.01	70.53
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	71.03	67.47
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	47.36	67.1
GSMUA_Achr4P32590_001	Banana	cytosol	69.66	67.04
GSMUA_Achr6P16820_001	Banana	cytosol	66.67	65.76
GSMUA_Achr10P...	Banana	cytosol	57.47	64.27
OQU79433	Sorghum	cytosol	66.21	64.14
TraesCS5B01G078600.2	Wheat	cytosol	62.76	63.49
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	66.9	63.26
GSMUA_Achr10P...	Banana	plastid	60.69	63.01
GSMUA_Achr7P00620_001	Banana	mitochondrion	58.85	62.9
TraesCS5D01G085100.1	Wheat	cytosol	66.9	62.85
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	65.98	62.8
Os03t0606100-01	Rice	cytosol	63.45	62.73
TraesCS4B01G077800.1	Wheat	cytosol	65.75	62.58
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	65.75	62.58
TraesCS5A01G072300.1	Wheat	cytosol	66.44	62.42
GSMUA_Achr2P13470_001	Banana	cytosol	62.99	62.41
GSMUA_Achr6P24020_001	Banana	cytosol	57.24	62.09
Os12t0581300-01	Rice	cytosol	22.53	62.03
GSMUA_Achr2P21540_001	Banana	plastid	61.84	61.56
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	66.9	60.62
Zm00001d030837_P001	Maize	cytosol, mitochondrion	65.75	59.83
EER91248	Sorghum	cytosol	63.68	59.31
Zm00001d013746_P001	Maize	cytosol	61.84	58.1
TraesCS2D01G192800.1	Wheat	nucleus	67.13	57.71
TraesCS2B01G211900.1	Wheat	nucleus	67.13	57.37
TraesCS2A01G194900.1	Wheat	nucleus	66.9	57.28
Os07t0591100-01	Rice	nucleus	68.05	57.14
OQU92347	Sorghum	mitochondrion, plastid	63.22	56.47
EER99634	Sorghum	nucleus	66.67	55.56
Zm00001d047324_P001	Maize	cytosol	62.07	55.1
Zm00001d006749_P001	Maize	cytosol	65.98	54.56
Zm00001d016585_P002	Maize	extracellular, plasma membrane	30.8	52.96
HORVU4Hr1G013190.8	Barley	mitochondrion	61.38	52.87
CDY03939	Canola	cytosol	14.25	52.54
Zm00001d022006_P001	Maize	cytosol, plastid	66.67	52.06
CDX90103	Canola	mitochondrion, plastid	55.86	47.93
CDY67976	Canola	mitochondrion, plastid	55.63	47.73
CDY68684	Canola	cytosol, mitochondrion	29.89	45.45
CDX87382	Canola	mitochondrion	42.99	44.84
CDX88540	Canola	mitochondrion	42.99	44.84
CDY53851	Canola	cytosol	37.93	44.72
CDY30758	Canola	cytosol	37.93	44.72
CDY55767	Canola	cytosol	37.7	44.57
CDX81011	Canola	cytosol	37.7	44.57
CDY52160	Canola	cytosol	37.7	44.44
CDX79318	Canola	cytosol	8.74	44.19
CDY49838	Canola	cytosol	37.47	44.17
CDX70123	Canola	cytosol	40.92	40.18
CDX98870	Canola	cytosol	40.92	40.09
CDX68146	Canola	cytosol	34.71	39.95
CDY46011	Canola	cytosol	36.32	39.9
CDY37259	Canola	cytosol	36.32	39.9
CDY02955	Canola	cytosol, nucleus, plastid	37.01	39.85
CDX76076	Canola	cytosol, nucleus, plastid	36.78	39.6
CDY27272	Canola	cytosol, nucleus, plastid	39.31	39.4

Protein Annotations

EnsemblPlants:CDX95439	EnsemblPlantsGene:GSBRNA2T00101190001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1	PFAM:PF04788
ProteinID:CDX95439	ProteinID:CDX95439.1	SEG:seg	UniParc:UPI0004EE3BB6	MapMan:27.4.5.3	:

Description

BnaC01g33310D

Coordinates

chrLK031889:-:147848..149302

Molecular Weight (calculated)

47417.4 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.404

Length

435 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LRGLSPSRGR KNFTGGAAAA NYYVTQPELL IERSGSLRPV MEGPDLDEEE EGGGGSVGDS KRLRSGLGNW VKGQLSRAPS VAATAAHRRN
101: DLRLLLGVMG APLAPIHFSS DPLPHLSIKN TPIETSSAQY ILQQYTAASG GQKLQSSIKN AYAMGKLKMI TSEIQTATRT VRNRNPSKAE TGGFVLWQMN
201: PDMWYVELSV GGNKVRAGCN GKLVWRHTPW LGSHTAKGPV RPLRRGLQGL DPRTTAAMFA EAKCIGEKNV NGEDCFILKL STDPETLKAR SEGPAEIIRH
301: VLSGYFSQKT GLLVHIEDSH LTRIQSNGGD TVFWETTYNS SLDDYRQVEG VMIAHSGHSV VTLFRFGEVA MSHTRTKMEE SWTIEEVAFN VPGLSLDCFI
401: PPADLKTGSV ADSCEYGQEE RGKAAHRAKV AALEN

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.