Factsheet for GSMUA_Achr6P16820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P25250_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P21580_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P36120_001
GSMUA_Achr8P00880_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P08650_001
GSMUA_Achr9P17280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr5P25250_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P00880_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P08650_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_AchrUn_...	AT3G07120.1	21798944
AT1G49840.1	GSMUA_Achr6P21580_001	AT1G21840.1	21798944
AT3G19540.1	GSMUA_Achr6P36120_001	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	82.99	79.91
GSMUA_Achr10P...	Banana	cytosol	68.03	77.12
GSMUA_Achr6P24020_001	Banana	cytosol	68.71	75.56
GSMUA_Achr4P32590_001	Banana	cytosol	74.38	72.57
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	49.43	71.01
KRG91072	Soybean	plastid	73.92	70.41
KRH35700	Soybean	plastid	73.47	70.13
VIT_03s0091g00410.t01	Wine grape	plastid	75.28	69.89
PGSC0003DMT400066530	Potato	plastid	73.02	68.51
Solyc01g107350.2.1	Tomato	plastid	72.79	68.3
PGSC0003DMT400055468	Potato	plastid	72.79	68.3
GSMUA_Achr10P...	Banana	plastid	64.85	68.26
VIT_18s0001g09450.t01	Wine grape	plastid	72.56	68.23
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	73.7	67.71
CDY50147	Canola	mitochondrion	66.44	66.74
CDX95439	Canola	mitochondrion	65.76	66.67
GSMUA_Achr2P13470_001	Banana	cytosol	66.21	66.51
GSMUA_Achr2P21540_001	Banana	plastid	65.76	66.36
GSMUA_Achr7P00620_001	Banana	mitochondrion	60.54	65.6
KRH05611	Soybean	plastid	70.52	65.34
KRH15430	Soybean	plastid	69.39	64.69
Bra038214.1-P	Field mustard	mitochondrion, plastid	67.12	64.49
AT3G19540.1	Thale cress	plastid	70.75	64.33
CDY67693	Canola	mitochondrion	65.99	64.1
CDY46168	Canola	mitochondrion	65.99	63.82
Bra022430.1-P	Field mustard	mitochondrion, plastid	67.8	63.75
Solyc04g078190.2.1	Tomato	nucleus, plastid	41.27	62.12
CDY16530	Canola	plastid	63.04	61.5
CDY32838	Canola	plastid	62.81	60.88
AT1G49840.1	Thale cress	plastid	64.85	57.89
Bra014219.1-P	Field mustard	plastid	63.95	57.79
AT1G27690.1	Thale cress	plastid	55.78	56.81
CDY03939	Canola	cytosol	14.29	53.39
Bra010924.1-P	Field mustard	mitochondrion, plastid	57.6	47.57
CDX90103	Canola	mitochondrion, plastid	54.42	47.34
CDY67976	Canola	mitochondrion, plastid	54.42	47.34
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	34.69	46.79
GSMUA_Achr3P29550_001	Banana	cytosol	36.51	45.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	38.1	44.33
GSMUA_Achr9P25120_001	Banana	mitochondrion	33.79	44.21
GSMUA_Achr4P27870_001	Banana	cytosol	36.73	42.63
GSMUA_Achr2P13560_001	Banana	cytosol	36.05	42.18
GSMUA_Achr5P28960_001	Banana	cytosol	41.27	41.74
GSMUA_Achr6P33890_001	Banana	cytosol	34.24	39.43

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16820_001	EnsemblPlants:GSMUA_Achr6T16820_001	EnsemblPlantsGene:GSMUA_Achr6G16820_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1
PFAM:PF04788	SEG:seg	UniParc:UPI0002966DDE	UniProt:M0T7N0	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G16820_001]

Coordinates

chr6:+:11224442..11226399

Molecular Weight (calculated)

47597.9 Da

IEP (calculated)

9.240

GRAVY (calculated)

-0.269

Length

441 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LREEVVRGLS PARSRSREKS TGSGRSPAAE APALSVSFRE TLAPLMEGPD GGGSGDDDGA PTKEGWGRWV KGQLSRAPSV TSSSAGGASS
101: SFRRSDLRLL LGVMGAPLAP LHVSCVDPLP HLSIKNTPIE TSSAQYILQQ YTAASGGLKL QRSIRNAYAM GKVRMVASEF ETATKVVKNR GGSSRTAESG
201: GFVLWQMTPD MWYVELAVGG SKVHAGSNGK VVWRHTPWLG AHAARGPVRP LRRALQGLDP LTTASMFADA RCIGEKKVNG EDCFILKLCA DPQTLKARSE
301: GPAEIIRHVL IQATAGGDAV YWETTINSFL DDYRPVEGIM IAHSGRSDVT LFRFGEAAMS HTKTRMEEVW TIEEVAFNVP GLSMDCFIPP ADVRCVSIGE
401: TCELAQGERG KTTTGVAHRA KVAAVEKPQD MRDRIVWRLQ V

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.