CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRG99707
KRH05664
KRH18664
KRH46683
KRH52013
KRH61306
KRH61311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	KRG89812	AT2G41100.1	17360592
AT1G27690.1	KRG94975	AT2G41100.1	17360592
AT1G27690.1	KRH18664	AT2G41100.1	17360592
AT1G27690.1	KRG99707	AT3G07120.1	21798944
AT1G27690.1	KRH46683	AT3G07120.1	21798944
AT1G27690.1	KRH05664	AT5G42940.1	21798944
AT1G27690.1	KRH52013	AT5G42940.1	21798944
AT1G27690.1	KRH61306	AT5G42940.1	21798944
AT1G27690.1	KRH61311	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05611	Soybean	plastid	97.67	97.06
VIT_18s0001g09450.t01	Wine grape	plastid	80.55	81.24
PGSC0003DMT400055468	Potato	plastid	78.86	79.36
KRG91072	Soybean	plastid	74.42	76.03
KRH35700	Soybean	plastid	74.21	75.97
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	71.67	74.02
GSMUA_Achr4P32590_001	Banana	cytosol	68.08	71.24
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	45.88	70.68
Solyc04g078190.2.1	Tomato	nucleus, plastid	43.76	70.65
GSMUA_Achr10P...	Banana	cytosol	57.29	69.67
GSMUA_Achr6P16820_001	Banana	cytosol	64.69	69.39
GSMUA_Achr6P24020_001	Banana	cytosol	58.56	69.08
Os12t0581300-01	Rice	cytosol	22.83	68.35
GSMUA_Achr7P00620_001	Banana	mitochondrion	58.77	68.3
GSMUA_Achr10P...	Banana	plastid	60.04	67.78
AT1G27690.1	Thale cress	plastid	61.95	67.67
OQU79433	Sorghum	cytosol	63.64	67.04
TraesCS5B01G078600.2	Wheat	cytosol	60.47	66.51
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	64.48	66.3
TraesCS5D01G085100.1	Wheat	cytosol	64.69	66.09
GSMUA_Achr2P21540_001	Banana	plastid	60.68	65.68
TraesCS5A01G072300.1	Wheat	cytosol	64.27	65.66
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	66.38	65.42
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	63.0	65.21
TraesCS4B01G077800.1	Wheat	cytosol	63.0	65.21
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	62.79	64.99
TraesCS2D01G192800.1	Wheat	nucleus	69.13	64.62
TraesCS2B01G211900.1	Wheat	nucleus	69.13	64.24
TraesCS2A01G194900.1	Wheat	nucleus	68.92	64.17
GSMUA_Achr2P13470_001	Banana	cytosol	59.41	64.01
Os03t0606100-01	Rice	cytosol	59.41	63.86
Os07t0591100-01	Rice	nucleus	69.13	63.13
EER99634	Sorghum	nucleus	69.56	63.03
EER91248	Sorghum	cytosol	61.31	62.1
OQU92347	Sorghum	mitochondrion, plastid	63.85	62.01
CDY03939	Canola	cytosol	15.43	61.86
Zm00001d030837_P001	Maize	cytosol, mitochondrion	61.95	61.3
Zm00001d013746_P001	Maize	cytosol	59.83	61.12
Zm00001d047324_P001	Maize	cytosol	62.16	60.0
Zm00001d006749_P001	Maize	cytosol	66.38	59.7
Zm00001d022006_P001	Maize	cytosol, plastid	68.71	58.35
CDX90103	Canola	mitochondrion, plastid	59.41	55.42
CDY67976	Canola	mitochondrion, plastid	59.2	55.23
Bra010924.1-P	Field mustard	mitochondrion, plastid	62.16	55.06
HORVU4Hr1G013190.8	Barley	mitochondrion	58.56	54.85
Zm00001d016585_P002	Maize	extracellular, plasma membrane	29.18	54.55
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	41.01	50.39
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	40.59	50.0
KRG96347	Soybean	cytosol	36.15	48.44
KRH71794	Soybean	cytosol	36.79	48.07
KRH68081	Soybean	cytosol	35.94	47.62
KRH38019	Soybean	peroxisome	36.15	47.37
KRH73113	Soybean	cytosol	38.9	43.4
KRH50361	Soybean	cytosol	34.67	42.93
KRH51867	Soybean	cytosol	34.67	42.93
KRH31070	Soybean	cytosol	38.9	42.2
KRG97798	Soybean	cytosol	39.11	42.14
KRH15018	Soybean	cytosol	37.42	41.45
KRH28651	Soybean	cytosol	32.14	40.21
KRH05801	Soybean	cytosol	32.56	40.0
KRH76791	Soybean	cytosol	31.29	39.57

Protein Annotations

EMBL:ACUP02008592	EnsemblPlants:KRH15430	EnsemblPlantsGene:GLYMA_14G087300	EntrezGene:100792748	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF7	PFAM:PF04788	ProteinID:KRH15430	ProteinID:KRH15430.1	SEG:seg	UniParc:UPI000233B6EB
UniProt:I1M8S0	MapMan:27.4.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:7817511..7820354

Molecular Weight (calculated)

51976.0 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.375

Length

473 amino acids

Sequence
(BLAST)

001: MERKQGFFSA LKDEVVRGLS PARSRAKSPA RSASPMSSLL RRRRKHHAPP PELFIARSGS LRPAEALSPL KEGPDGTDGG QDSSRGEGRW GQWMKGPLAR
101: APSVSSSSSS CNNKKSDLRL LLGVLGAPLA PVHVCTTDPF PHLSIKDIPI ETSSAQYILQ QYIAASGGQK LQNSINNAYA MGKVRMIASE FETANKVTRS
201: RNSSKAAESG GFVLWQMNPD MWYVELALGG SKVHAGCNGR LVWRHTPWLG AHAAKGPVRP LRRTLQGLDP RTTASMFINT RCIGEKKINE EDCFILKLCA
301: DPSTLKARSE GPAEIIRHVL FGYFSQKTGL LVHLEDSHLT RIQNNGGEAV YWETTINSFL DDYRPVEGIM IAHSGRSVVT LFRFGETAMS HTKTRMEEAW
401: TIEEVAFNVP GLSVDCFIPP SELRFASMSE ACELPQGQRV KTAVAAAAYH AKVTQLQKSH DSHTNNINWT VDV

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.