CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES01631
EES04107
EES05544
EES09201
EES16322
OQU78227
OQU80845
OQU84434
OQU89743

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	EES01631	AT2G41100.1	17360592
AT1G27690.1	EES09201	AT2G41100.1	17360592
AT1G27690.1	EES16322	AT2G41100.1	17360592
AT1G27690.1	OQU78227	AT2G41100.1	17360592
AT1G27690.1	EES04107	AT3G07120.1	21798944
AT1G27690.1	OQU80845	AT3G07120.1	21798944
AT1G27690.1	OQU89743	AT3G07120.1	21798944
AT1G49840.1	OQU84434	AT1G21840.1	21798944
AT3G19540.1	EER88130	AT5G62880.1	21798944
AT3G19540.1	EES05544	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G192800.1	Wheat	nucleus	87.16	89.92
TraesCS2B01G211900.1	Wheat	nucleus	87.16	89.39
TraesCS2A01G194900.1	Wheat	nucleus	86.97	89.37
Zm00001d006749_P001	Maize	cytosol	89.08	88.4
Zm00001d022006_P001	Maize	cytosol, plastid	93.87	87.97
Os07t0591100-01	Rice	nucleus	86.59	87.26
OQU92347	Sorghum	mitochondrion, plastid	71.65	76.8
VIT_03s0091g00410.t01	Wine grape	plastid	67.24	73.89
KRG91072	Soybean	plastid	63.41	71.49
KRH35700	Soybean	plastid	63.22	71.43
PGSC0003DMT400066530	Potato	plastid	64.18	71.28
Solyc01g107350.2.1	Tomato	plastid	63.98	71.06
OQU79433	Sorghum	cytosol	60.54	70.38
KRH15430	Soybean	plastid	63.03	69.56
KRH05611	Soybean	plastid	63.41	69.54
VIT_18s0001g09450.t01	Wine grape	plastid	62.26	69.3
EER91248	Sorghum	cytosol	61.3	68.52
PGSC0003DMT400055468	Potato	plastid	61.49	68.3
CDX95439	Canola	mitochondrion	55.56	66.67
CDY50147	Canola	mitochondrion	55.94	66.51
Zm00001d016585_P002	Maize	extracellular, plasma membrane	31.99	66.01
Bra038214.1-P	Field mustard	mitochondrion, plastid	56.9	64.71
CDY67693	Canola	mitochondrion	56.13	64.54
CDY16530	Canola	plastid	55.75	64.38
AT3G19540.1	Thale cress	plastid	59.77	64.33
CDY46168	Canola	mitochondrion	55.94	64.04
Bra022430.1-P	Field mustard	mitochondrion, plastid	57.28	63.75
CDY32838	Canola	plastid	55.17	63.3
Solyc04g078190.2.1	Tomato	nucleus, plastid	34.67	61.77
Bra014219.1-P	Field mustard	plastid	57.47	61.48
AT1G49840.1	Thale cress	plastid	56.51	59.72
AT1G27690.1	Thale cress	plastid	49.23	59.35
CDY03939	Canola	cytosol	12.84	56.78
CDY67976	Canola	mitochondrion, plastid	48.28	49.7
CDX90103	Canola	mitochondrion, plastid	48.08	49.51
Bra010924.1-P	Field mustard	mitochondrion, plastid	50.19	49.06
EER95445	Sorghum	cytosol	33.14	47.14
EER95119	Sorghum	cytosol	37.16	43.79
OQU89854	Sorghum	cytosol	30.08	40.89
EES03659	Sorghum	cytosol	29.5	40.1
EES17962	Sorghum	cytosol, nucleus, plastid	33.52	36.84

Protein Annotations

EnsemblPlants:EER99634	EnsemblPlantsGene:SORBI_3002G360500	EntrezGene:8078986	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF5
PFAM:PF04788	ProteinID:EER99634	ProteinID:EER99634.1	RefSeq:XP_002463113.1	SEG:seg	unigene:Sbi.7852
UniParc:UPI0001A83C37	UniProt:C5XD51	MapMan:27.4.5.3	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:72259819..72262572

Molecular Weight (calculated)

55727.7 Da

IEP (calculated)

10.124

GRAVY (calculated)

-0.298

Length

522 amino acids

Sequence
(BLAST)

001: MEKERKQGFF ATLKEEVVRG LSPARSRGKS PAPPRSASPA RMLIPRRRKA PAAPPPPPPE KVLQQYLGEQ LVSRSGSLRP GGEALAPLIE GPDAERLAAG
101: DPDAEDSGRR EGFGHWVRGH LTRTPSMASS AAAGGGGPGG SSGSFRRSDL RLLLGVMGAP LAPMSSKPAE PLPLLSIKGT PIESSSAQYI LHQYTAASGG
201: YRLLQSVRNA YAMGKVRMVA SEFETATRVV KNRGPSGRGA AAVEQGGFVL WQMAPDMWYV ELAVGGSKVH AGSNGRLVWR HTPWLGAHAA KGPVRPLRRV
301: LQGLDPLTTA GLFAEARCVG EKKVNGEDCF ILKLTADPQT LKLRSEGPAE IIRHVLFGYF SQRTGLIVHI EDSHLTRIQP HAGGDAVYWE TTISSALEDY
401: RAVEGIMIAH SGRSAVTLFR FGEAAMSHTK TRMEEAWSIE EVAFNVPGLS VDCFIPPADI RSGSVGEACE LPSQSQSHGE RAKTGAVHPS RVAAVERAHA
501: HSANAGAGAA GRGEKIMWRV EV

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.