Factsheet for VIT_03s0091g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g02490.t01
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49840.1	VIT_06s0009g02490.t01	AT1G21840.1	21798944
AT3G19540.1	VIT_17s0000g07890.t01	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066530	Potato	plastid	84.63	85.53
Solyc01g107350.2.1	Tomato	plastid	84.21	85.11
KRG91072	Soybean	plastid	81.68	83.8
KRH35700	Soybean	plastid	81.47	83.77
VIT_18s0001g09450.t01	Wine grape	plastid	78.53	79.53
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	50.32	77.85
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	74.95	77.73
CDY50147	Canola	mitochondrion	71.37	77.22
CDX95439	Canola	mitochondrion	70.53	77.01
Os12t0581300-01	Rice	cytosol	25.26	75.95
GSMUA_Achr6P16820_001	Banana	cytosol	69.89	75.28
AT3G19540.1	Thale cress	plastid	76.84	75.26
Bra038214.1-P	Field mustard	mitochondrion, plastid	72.42	74.95
CDY46168	Canola	mitochondrion	71.16	74.12
GSMUA_Achr4P32590_001	Banana	cytosol	70.53	74.11
CDY67693	Canola	mitochondrion	70.74	74.01
Bra022430.1-P	Field mustard	mitochondrion, plastid	72.63	73.56
GSMUA_Achr10P...	Banana	plastid	64.42	73.03
OQU79433	Sorghum	cytosol	68.84	72.83
TraesCS5B01G078600.2	Wheat	cytosol	65.89	72.79
GSMUA_Achr10P...	Banana	cytosol	59.58	72.75
CDY16530	Canola	plastid	68.63	72.12
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	69.26	71.99
GSMUA_Achr7P00620_001	Banana	mitochondrion	61.68	71.99
TraesCS5D01G085100.1	Wheat	cytosol	70.11	71.92
TraesCS5A01G072300.1	Wheat	cytosol	70.11	71.92
Os03t0606100-01	Rice	cytosol	66.53	71.82
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	69.47	71.74
TraesCS4B01G077800.1	Wheat	cytosol	68.84	71.55
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	68.84	71.55
CDY32838	Canola	plastid	68.42	71.43
GSMUA_Achr6P24020_001	Banana	cytosol	59.37	70.32
GSMUA_Achr2P21540_001	Banana	plastid	64.0	69.57
GSMUA_Achr2P13470_001	Banana	cytosol	63.79	69.02
TraesCS2D01G192800.1	Wheat	nucleus	73.47	68.97
Bra014219.1-P	Field mustard	plastid	70.74	68.85
AT1G49840.1	Thale cress	plastid	71.58	68.83
TraesCS2B01G211900.1	Wheat	nucleus	73.47	68.57
TraesCS2A01G194900.1	Wheat	nucleus	73.26	68.5
EER91248	Sorghum	cytosol	67.16	68.31
Os07t0591100-01	Rice	nucleus	74.32	68.15
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	68.84	68.12
EER99634	Sorghum	nucleus	73.89	67.24
Zm00001d013746_P001	Maize	cytosol	65.47	67.17
Zm00001d030837_P001	Maize	cytosol, mitochondrion	67.37	66.95
OQU92347	Sorghum	mitochondrion, plastid	67.58	65.91
Zm00001d047324_P001	Maize	cytosol	65.68	63.67
Zm00001d006749_P001	Maize	cytosol	70.32	63.5
Zm00001d022006_P001	Maize	cytosol, plastid	73.26	62.48
HORVU4Hr1G013190.8	Barley	mitochondrion	63.79	60.0
Zm00001d016585_P002	Maize	extracellular, plasma membrane	31.16	58.5
VIT_19s0085g00900.t01	Wine grape	mitochondrion	43.58	53.35
VIT_04s0023g01510.t01	Wine grape	cytosol	36.21	47.38
VIT_13s0019g03180.t01	Wine grape	cytosol	40.42	45.07
VIT_18s0001g12320.t01	Wine grape	cytosol	34.74	44.35
VIT_08s0007g07110.t01	Wine grape	cytosol	36.42	26.21

Protein Annotations

ArrayExpress:VIT_03s0091g00410	EMBL:AM479159	EMBL:FN595242	EnsemblPlants:VIT_03s0091g00410.t01	EnsemblPlantsGene:VIT_03s0091g00410	EntrezGene:100257657
EntrezGene:LOC100257657	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1	PFAM:PF04788	ProteinID:CAN68554
ProteinID:CAN68554.1	ProteinID:CCB47721	ProteinID:CCB47721.1	RefSeq:XP_002271922	RefSeq:XP_002271922.1	unigene:Vvi.3272
UniParc:UPI0001522519	UniProt:A5C1V9	wikigene:100257657	wikigene:LOC100257657	MapMan:27.4.5.3	:

Description

No Description!

Coordinates

chr3:+:6773316..6776359

Molecular Weight (calculated)

52041.4 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.345

Length

475 amino acids

Sequence
(BLAST)

001: MDRKQGFFAA LKEEVVRGLS PARSRAKSPG RAGSPMSGLL RRRKQSHNQY VANPEPLISR SGSLRPVVGE TLTPLMEGPD PDGSEIGESK RSGLGLGHWM
101: KGQLSRTPSV TSAAYRRSDL RLLLGVMGAP LAPVHVSTTD PLPHLSIKDT PIETSSAQYI LQQYTAASGG QKLQNSIRNA YAMGKVKMIA SEFETATRVL
201: KNRNASKDAD SGGFVLWQMN PDMWYVELAV GGSKVHAGCN GKLVWRHTPW LGAHSAKGPV RPLRRALQGL DPRTTASMFA DARCIGEKKI NGEDCFILKL
301: CADPQTLKAR SEGPAEIIRH VLFGYFSQKT GLLVHMEDSH LTRIQSNGGD AVYWETTINS FLEDYRPVEG IMIAHSGRSI VTLFRFGEMA MSHTKTRMEE
401: TWTIEEVAFN VPGLSVDCFI PPADLRSGSI SEACELPHEE RGKSSVSLAA HRAKVAALEK THDGGIDNVI WRMEV

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.