Factsheet for VIT_06s0009g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73493	Soybean	cytosol	73.25	74.79
KRH14650	Soybean	cytosol, nucleus, peroxisome	72.84	74.37
Solyc03g031430.1.1	Tomato	cytosol	72.02	72.31
PGSC0003DMT400062329	Potato	cytosol	71.19	71.49
AT1G21840.1	Thale cress	cytosol	67.08	67.92
Bra012296.1-P	Field mustard	cytosol	65.84	65.31
CDY01311	Canola	cytosol	65.84	65.31
HORVU6Hr1G027660.9	Barley	cytosol	63.79	59.62
TraesCS6A01G141300.1	Wheat	cytosol	62.96	59.53
TraesCS6B01G169600.1	Wheat	cytosol	62.14	58.75
TraesCS6D01G130700.1	Wheat	cytosol	61.73	58.37
Zm00001d015355_P001	Maize	cytosol	62.96	57.74
Os02t0168000-02	Rice	plasma membrane	63.79	53.08
OQU84434	Sorghum	endoplasmic reticulum, vacuole	61.32	51.38
GSMUA_Achr6P21580_001	Banana	cytosol, plastid	65.02	50.8
TraesCS6A01G141400.1	Wheat	cytosol, endoplasmic reticulum, plastid	45.27	38.87

Protein Annotations

Gene3D:1.10.4190.10	EntrezGene:100266725	wikigene:100266725	MapMan:4.2.1.3.2	ProteinID:CCB49101	ProteinID:CCB49101.1
UniProt:F6HAD0	EMBL:FN595504	GO:GO:0003674	GO:GO:0005488	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0016151	GO:GO:1905182	InterPro:IPR038277	EntrezGene:LOC100266725	wikigene:LOC100266725
PFAM:PF01730	PIRSF:PIRSF009467	PANTHER:PTHR33620	PANTHER:PTHR33620:SF1	TIGR:TC66939	TMHMM:TMhelix
UniParc:UPI00019836BE	InterPro:UreF	InterPro:UreF_sf	ArrayExpress:VIT_06s0009g02490	EnsemblPlantsGene:VIT_06s0009g02490	EnsemblPlants:VIT_06s0009g02490.t01
unigene:Vvi.11761	RefSeq:XP_002265807	RefSeq:XP_002265807.1	RefSeq:XP_002265848	RefSeq:XP_002265848.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:15030529..15038432

Molecular Weight (calculated)

26454.1 Da

IEP (calculated)

6.594

GRAVY (calculated)

0.153

Length

243 amino acids

Sequence
(BLAST)

001: MEVPMEIDKG SHGPASTNAL LQWSQWQLLD SILPTGGFAH SCGLEAAFQA HMISGPEDLQ TYVLHVLENT GSLLLPFVYS ANMSPNLETW HKLDRMLDAT
101: LTNEVGRKAS IAQGSALMRV AATVFSEVPS LKMMRSNSLG SGTVAFHHAP IFGLVCGLLG LDVGISQRAY MFITMRDVIS AATRLNLIGP LGAAKLQHDI
201: AIAAEEMSKK WMNRKFEEAC QTAPLLDTVQ GCHAYLFSRL FCS

Best Arabidopsis Sequence Match ( AT1G21840.2 )
(BLAST)

001: MEEDERRDIV MSRASSCMQW SQWQLLDSIL PTGGFAHSFG LEAAIQTRLV SSPEDLETHI IHVLDNTASL LLPFVYSALK SPDIETWHKL DGILNATLTN
101: QVSSKASMSQ GSALFRIAAS VFTEVPNLKM IRDASLGSKN VCFHHAPIFG LVCGLLGMDS ETSQRAYLFV TLRDVLSAAT RLNIVGPMGA SVMQHRIAIV
201: TETVLEKWMN REAGEACQTS PLLDVVQGCH GYLFSRLFCS

Arabidopsis Description

UREFUrease accessory protein F [Source:UniProtKB/Swiss-Prot;Acc:Q9XHZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.