Factsheet for PGSC0003DMT400062329

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031430.1.1	Tomato	cytosol	95.87	95.87
VIT_06s0009g02490.t01	Wine grape	cytosol, nucleus, peroxisome	71.49	71.19
KRH73493	Soybean	cytosol	69.83	71.01
KRH14650	Soybean	cytosol, nucleus, peroxisome	67.77	68.91
AT1G21840.1	Thale cress	cytosol	65.7	66.25
CDY01311	Canola	cytosol	65.29	64.49
Bra012296.1-P	Field mustard	cytosol	64.05	63.27
TraesCS6A01G141300.1	Wheat	cytosol	60.74	57.2
HORVU6Hr1G027660.9	Barley	cytosol	61.16	56.92
TraesCS6B01G169600.1	Wheat	cytosol	60.33	56.81
TraesCS6D01G130700.1	Wheat	cytosol	59.92	56.42
Zm00001d015355_P001	Maize	cytosol	60.74	55.47
Os02t0168000-02	Rice	plasma membrane	62.81	52.05
GSMUA_Achr6P21580_001	Banana	cytosol, plastid	64.88	50.48
OQU84434	Sorghum	endoplasmic reticulum, vacuole	60.33	50.34
TraesCS6A01G141400.1	Wheat	cytosol, endoplasmic reticulum, plastid	44.21	37.81

Protein Annotations

Gene3D:1.10.4190.10	EntrezGene:102587785	MapMan:4.2.1.3.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0016151	GO:GO:1905182	InterPro:IPR038277	UniProt:M1C8W7
PFAM:PF01730	EnsemblPlantsGene:PGSC0003DMG400024255	PGSC:PGSC0003DMG400024255	EnsemblPlants:PGSC0003DMT400062329	PIRSF:PIRSF009467	PANTHER:PTHR33620
PANTHER:PTHR33620:SF1	UniParc:UPI000295C66A	InterPro:UreF	InterPro:UreF_sf	RefSeq:XP_006362700.1	RefSeq:XP_006362701.1
SEG:seg	:	:	:	:	:

Description

Urease accessory protein F [Source:PGSC_GENE;Acc:PGSC0003DMG400024255]

Coordinates

chr3:-:41680200..41681703

Molecular Weight (calculated)

26774.3 Da

IEP (calculated)

5.597

GRAVY (calculated)

0.089

Length

242 amino acids

Sequence
(BLAST)

001: MEDVEEKIEG SLQFTPNELL QWSQWQLLDS VLPTGGFAHS FGVEAAIQAR LVSGPEDLRT FVIHILENTG SLLLPFVYTL NTSPNVETWY KLDKILDATL
101: TNEVSRKTSI SQGSALLRVA AAVFQEVPYF KTMREMTLAS GAVRFHHAPI FGLVCGLLGL NAETSQKTYL FITMRDVVSA ATRLNLVGPL GAAVLQHQLA
201: ANAEELSKKW MNRPVEEACQ TNPLLDTIQG CHGYLFSRLF CS

Best Arabidopsis Sequence Match ( AT1G21840.2 )
(BLAST)

001: MEEDERRDIV MSRASSCMQW SQWQLLDSIL PTGGFAHSFG LEAAIQTRLV SSPEDLETHI IHVLDNTASL LLPFVYSALK SPDIETWHKL DGILNATLTN
101: QVSSKASMSQ GSALFRIAAS VFTEVPNLKM IRDASLGSKN VCFHHAPIFG LVCGLLGMDS ETSQRAYLFV TLRDVLSAAT RLNIVGPMGA SVMQHRIAIV
201: TETVLEKWMN REAGEACQTS PLLDVVQGCH GYLFSRLFCS

Arabidopsis Description

UREFUrease accessory protein F [Source:UniProtKB/Swiss-Prot;Acc:Q9XHZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.