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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os01t0917900-01
Os02t0168000-02
Os02t0742200-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os06t0234200-03
Os07t0687200-02
Os09t0505000-00
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G27690.1 Os01t0267900-01 AT2G41100.1 17360592
AT1G27690.1 Os01t0279300-01 AT2G41100.1 17360592
AT1G27690.1 Os01t0810300-01 AT2G41100.1 17360592
AT1G27690.1 Os03t0319300-01 AT2G41100.1 17360592
AT1G27690.1 Os05t0491000-01 AT2G41100.1 17360592
AT1G27690.1 Os05t0491100-01 AT2G41100.1 17360592
AT1G27690.1 Os07t0687200-02 AT2G41100.1 17360592
AT1G27690.1 Os12t0603800-00 AT2G41100.1 17360592
AT1G27690.1 Os01t0917900-01 AT3G07120.1 21798944
AT1G27690.1 Os09t0505000-00 AT3G07120.1 21798944
AT1G49840.1 Os02t0168000-02 AT1G21840.1 21798944
AT3G19540.1 Os02t0742200-01 AT5G62880.1 21798944
AT3G19540.1 Os06t0234200-03 AT5G62880.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03939 Canola cytosol 38.61 51.69
TraesCS5B01G078600.2 Wheat cytosol 93.04 34.19
OQU79433 Sorghum cytosol 94.3 33.18
TraesCS5D01G085100.1 Wheat cytosol 94.3 32.18
TraesCS5A01G072300.1 Wheat cytosol 93.67 31.97
HORVU5Hr1G018870.3 Barley cytosol, mitochondrion 92.41 31.74
Os03t0606100-01 Rice cytosol 87.34 31.36
Zm00001d030837_P001 Maize cytosol, mitochondrion 78.48 25.94
VIT_03s0091g00410.t01 Wine grape plastid 75.95 25.26
GSMUA_Achr7P00620_001 Banana mitochondrion 63.29 24.57
PGSC0003DMT400066530 Potato plastid 72.78 24.47
Solyc01g107350.2.1 Tomato plastid 72.15 24.26
KRG91072 Soybean plastid 68.35 23.33
VIT_18s0001g09450.t01 Wine grape plastid 68.99 23.24
CDY16530 Canola plastid 66.46 23.23
PGSC0003DMT400055468 Potato plastid 68.99 23.19
KRH35700 Soybean plastid 67.09 22.94
KRH15430 Soybean plastid 68.35 22.83
KRH05611 Soybean plastid 68.35 22.69
CDY32838 Canola plastid 65.19 22.64
CDX95439 Canola mitochondrion 62.03 22.53
CDY50147 Canola mitochondrion 62.03 22.32
CDY67693 Canola mitochondrion 63.29 22.03
CDY46168 Canola mitochondrion 63.29 21.93
Bra014219.1-P Field mustard plastid 66.46 21.52
Bra022430.1-P Field mustard mitochondrion, plastid 63.29 21.32
Os07t0591100-01 Rice nucleus 69.62 21.24
Bra038214.1-P Field mustard mitochondrion, plastid 61.39 21.13
AT3G19540.1 Thale cress plastid 64.56 21.03
AT1G49840.1 Thale cress plastid 65.19 20.85
Os03t0167400-00 Rice cytosol 43.04 18.58
AT1G27690.1 Thale cress plastid 50.63 18.48
CDY67976 Canola mitochondrion, plastid 54.43 16.96
CDX90103 Canola mitochondrion, plastid 53.8 16.77
Os03t0267500-01 Rice plasma membrane 45.57 16.33
Bra010924.1-P Field mustard mitochondrion, plastid 53.16 15.73
Os05t0252100-01 Rice cytosol 46.84 15.16
Os10t0411100-00 Rice cytosol, peroxisome, plasma membrane 40.51 14.29
Solyc04g078190.2.1 Tomato nucleus, plastid 6.33 3.41
Protein Annotations
EnsemblPlants:Os12t0581300-01EnsemblPlantsGene:Os12g0581300InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF20PFAM:PF04788
ProteinID:BAF30153.1ProteinID:BAT17817.1UniParc:UPI0000DD9F3AUniProt:Q0IMB2MapMan:27.4.5.3:
Description
Protein of unknown function DUF620 family protein. (Os12t0581300-01)
Coordinates
chr12:-:24087199..24088344
Molecular Weight (calculated)
17467.7 Da
IEP (calculated)
5.861
GRAVY (calculated)
-0.153
Length
158 amino acids
Sequence
(BLAST)
001: RHVLFGYFSQ KTGLLVHLED SHLTRIQSTT GGDAVYWETT INSFIEDYRP VEGIMVAHAG RSAVTLFRFG EVAMSHTKTR MEEAWSIEEV AFNVPGLSID
101: CFIPPTDIKS GSISETVELP HGEKSKVGLL QCHSAKVAAL EKADDNVAWS GALQRDFK
Best Arabidopsis Sequence Match ( AT1G27690.1 )
(BLAST)
001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
Arabidopsis Description
Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.