CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03338
KRH14650
KRH54429
KRH54430
KRH57035
KRH63489
KRH73493

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49840.1	KRH14650	AT1G21840.1	21798944
AT1G49840.1	KRH73493	AT1G21840.1	21798944
AT3G19540.1	KRH03338	AT5G62880.1	21798944
AT3G19540.1	KRH54429	AT5G62880.1	21798944
AT3G19540.1	KRH54430	AT5G62880.1	21798944
AT3G19540.1	KRH57035	AT5G62880.1	21798944
AT3G19540.1	KRH63489	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35700	Soybean	plastid	98.06	98.27
Solyc01g107350.2.1	Tomato	plastid	83.37	82.13
PGSC0003DMT400066530	Potato	plastid	83.15	81.91
VIT_03s0091g00410.t01	Wine grape	plastid	83.8	81.68
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	75.81	76.64
CDY50147	Canola	mitochondrion	72.35	76.31
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	50.54	76.22
CDX95439	Canola	mitochondrion	71.27	75.86
CDY67693	Canola	mitochondrion	73.0	74.45
KRH15430	Soybean	plastid	76.03	74.42
Bra038214.1-P	Field mustard	mitochondrion, plastid	73.65	74.29
GSMUA_Achr6P16820_001	Banana	cytosol	70.41	73.92
CDY46168	Canola	mitochondrion	72.79	73.9
Bra022430.1-P	Field mustard	mitochondrion, plastid	74.73	73.77
KRH05611	Soybean	plastid	75.81	73.74
AT3G19540.1	Thale cress	plastid	76.67	73.2
GSMUA_Achr4P32590_001	Banana	cytosol	71.27	73.01
GSMUA_Achr10P...	Banana	plastid	65.23	72.08
GSMUA_Achr10P...	Banana	cytosol	60.48	71.98
GSMUA_Achr7P00620_001	Banana	mitochondrion	63.07	71.74
OQU79433	Sorghum	cytosol	67.6	69.71
CDY16530	Canola	plastid	68.03	69.69
GSMUA_Achr6P24020_001	Banana	cytosol	60.26	69.58
GSMUA_Achr2P21540_001	Banana	plastid	65.66	69.57
Os03t0606100-01	Rice	cytosol	66.09	69.55
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	68.47	69.37
CDY32838	Canola	plastid	68.03	69.23
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	68.25	69.15
TraesCS4B01G077800.1	Wheat	cytosol	68.25	69.15
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	68.68	69.13
GSMUA_Achr2P13470_001	Banana	cytosol	65.44	69.02
TraesCS5D01G085100.1	Wheat	cytosol	68.9	68.9
TraesCS5A01G072300.1	Wheat	cytosol	68.9	68.9
TraesCS5B01G078600.2	Wheat	cytosol	63.5	68.37
Os12t0581300-01	Rice	cytosol	23.33	68.35
AT1G49840.1	Thale cress	plastid	71.71	67.21
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	69.11	66.67
Bra014219.1-P	Field mustard	plastid	70.19	66.6
EER91248	Sorghum	cytosol	65.87	65.31
TraesCS2D01G192800.1	Wheat	nucleus	71.06	65.02
Zm00001d013746_P001	Maize	cytosol	65.01	65.01
TraesCS2B01G211900.1	Wheat	nucleus	71.06	64.64
TraesCS2A01G194900.1	Wheat	nucleus	70.84	64.57
OQU92347	Sorghum	mitochondrion, plastid	67.82	64.48
Zm00001d030837_P001	Maize	cytosol, mitochondrion	66.52	64.44
Os07t0591100-01	Rice	nucleus	71.49	63.9
EER99634	Sorghum	nucleus	71.49	63.41
Zm00001d047324_P001	Maize	cytosol	66.31	62.65
Zm00001d006749_P001	Maize	cytosol	69.33	61.03
Zm00001d022006_P001	Maize	cytosol, plastid	70.41	58.53
HORVU4Hr1G013190.8	Barley	mitochondrion	63.71	58.42
Zm00001d016585_P002	Maize	extracellular, plasma membrane	30.24	55.34
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	43.2	51.95
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	42.76	51.56
KRG96347	Soybean	cytosol	38.01	49.86
KRH68081	Soybean	cytosol	38.01	49.3
KRH71794	Soybean	cytosol	36.5	46.69
KRH38019	Soybean	peroxisome	35.85	45.98
KRH50361	Soybean	cytosol	35.64	43.19
KRH51867	Soybean	cytosol	35.21	42.67
KRH73113	Soybean	cytosol	38.23	41.75
KRH31070	Soybean	cytosol	39.31	41.74
KRG97798	Soybean	cytosol	39.52	41.69
KRH28651	Soybean	cytosol	33.69	41.27
KRH15018	Soybean	cytosol	38.01	41.22
KRH76791	Soybean	cytosol	33.26	41.18
KRH05801	Soybean	cytosol	33.48	40.26

Protein Annotations

EMBL:ACUP02012660	EnsemblPlants:KRG91072	EnsemblPlantsGene:GLYMA_20G131300	EntrezGene:100813272	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF1	PFAM:PF04788	ProteinID:KRG91072	ProteinID:KRG91072.1	SEG:seg	UniParc:UPI0001BA8186
UniProt:I1NG05	MapMan:27.4.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:37197994..37201034

Molecular Weight (calculated)

50787.0 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.298

Length

463 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LKDEVVRGLS PSRSRSTSPA RTVSPITGLL RRKKRSPSPD SSVARSVSLR PLGETLTPLM EGPDPDGTEN GDPKRIGSGL GHWMKGQLSR
101: APSVSSYKRS DLRLLLGVMG APLAPVHVSS TDPLPHLSIK DTPIETSSAQ YILQQYTAAS GGLKLQNSIR NAYAMGKVRM VASEFETATR VVKNRSRCAE
201: SGGFVLWQMD PDMWYVELAV GGSKVHAGCN GKLVWRHTPW LGAHTAKGPV RPLRRALQGI DPRTTASMFA DAKCIGEKNI NGEDCFILKL CTDPETLKAR
301: SEGPAEIIRH VLFGYFSQKT GLLVHIEDSH LTRIQSNGGD AVYWETTINS FLSDYKPVEG IMIAHSGHSV VTLFRFGEMA MSHTKTRMEE AWTIDEVAFN
401: VQGLSVDCFI PPADLRTASV SEACELPQDE RAKNSLAVHR AKVVALEKSH NCSIDSMIWK MEI

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.