CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES01631
EES04107
EES05544
EES09201
EES16322
OQU78227
OQU80845
OQU84434
OQU89743

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	EES01631	AT2G41100.1	17360592
AT1G27690.1	EES09201	AT2G41100.1	17360592
AT1G27690.1	EES16322	AT2G41100.1	17360592
AT1G27690.1	OQU78227	AT2G41100.1	17360592
AT1G27690.1	EES04107	AT3G07120.1	21798944
AT1G27690.1	OQU80845	AT3G07120.1	21798944
AT1G27690.1	OQU89743	AT3G07120.1	21798944
AT1G49840.1	OQU84434	AT1G21840.1	21798944
AT3G19540.1	EER88130	AT5G62880.1	21798944
AT3G19540.1	EES05544	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047324_P001	Maize	cytosol	87.27	86.73
EER99634	Sorghum	nucleus	76.8	71.65
KRG91072	Soybean	plastid	64.48	67.82
VIT_03s0091g00410.t01	Wine grape	plastid	65.91	67.58
KRH35700	Soybean	plastid	64.07	67.53
OQU79433	Sorghum	cytosol	60.78	65.92
PGSC0003DMT400066530	Potato	plastid	62.83	65.11
Solyc01g107350.2.1	Tomato	plastid	62.83	65.11
EER91248	Sorghum	cytosol	61.6	64.24
KRH15430	Soybean	plastid	62.01	63.85
KRH05611	Soybean	plastid	62.22	63.66
CDY50147	Canola	mitochondrion	57.29	63.55
VIT_18s0001g09450.t01	Wine grape	plastid	61.19	63.54
CDX95439	Canola	mitochondrion	56.47	63.22
PGSC0003DMT400055468	Potato	plastid	60.99	63.19
CDY16530	Canola	plastid	56.47	60.84
Bra038214.1-P	Field mustard	mitochondrion, plastid	57.29	60.78
CDY67693	Canola	mitochondrion	55.85	59.91
Solyc04g078190.2.1	Tomato	nucleus, plastid	35.73	59.39
CDY32838	Canola	plastid	55.44	59.34
AT3G19540.1	Thale cress	plastid	58.93	59.18
CDY46168	Canola	mitochondrion	55.24	58.99
Bra022430.1-P	Field mustard	mitochondrion, plastid	56.67	58.85
Bra014219.1-P	Field mustard	plastid	57.49	57.38
AT1G27690.1	Thale cress	plastid	50.31	56.58
AT1G49840.1	Thale cress	plastid	56.88	56.07
CDY03939	Canola	cytosol	12.94	53.39
CDY67976	Canola	mitochondrion, plastid	49.69	47.73
CDX90103	Canola	mitochondrion, plastid	49.69	47.73
Bra010924.1-P	Field mustard	mitochondrion, plastid	51.54	47.0
EER95445	Sorghum	cytosol	34.5	45.78
EER95119	Sorghum	cytosol	39.22	43.12
OQU89854	Sorghum	cytosol	32.85	41.67
EES03659	Sorghum	cytosol	32.44	41.15
EES17962	Sorghum	cytosol, nucleus, plastid	33.47	34.32

Protein Annotations

EnsemblPlants:OQU92347	EnsemblPlantsGene:SORBI_3001G331100	EntrezGene:8063225	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF5
PFAM:PF04788	ProteinID:EER94670.1	ProteinID:OQU92347	ProteinID:OQU92347.1	RefSeq:XP_002467672.1	SEG:seg
unigene:Sbi.20433	UniParc:UPI0001A83197	UniProt:C5WVN3	MapMan:27.4.5.3	:	:

Description

hypothetical protein

Coordinates

chr1:-:61884186..61887483

Molecular Weight (calculated)

52223.3 Da

IEP (calculated)

8.706

GRAVY (calculated)

-0.212

Length

487 amino acids

Sequence
(BLAST)

001: MDKERKQGFF SALKGEVVRG LSPARSRGKS RLLPRSRKTA AAAESVAVAA APPPEEELAQ YAPDPLVAHS GSLRPAGEVL APLMEGPDVA DDDAFAEESG
101: RRDGFGQWVR GHLTRAPLMS GGGAGDGSFR RSDLRLLLGV MGAPLAPVSV SAAEPHLSVK GAPIESSSAQ YILQQYLAAS GGAKVLRSVR NAYAMGKVRM
201: VASEFETATR VVKNRGSAAA AAVEQGGFVL WRMSPDMWYV ELAVGGSKVR AGCNGRLVWR HTPWLGAHAA KGPVRPLRRA LQGLDPLSTA GLFAEARCVG
301: EKKVGDEDCF ILKLSADAET LRQRSEGPAE IIRHVLFGYF SQRTGLLVHV EDSHLTRIQP HAGGDAVYWE TTISSFLEDY RAVDDGGVVI AHAGRSAVTL
401: FRFGEMAMSH TKTRMEEAWT IQEAAFNVPG LSTDCFIPPA DIRRGGDSVG SEPCGGKAGA VHPARVVVDR VHHPRRDADK IHWTVEM

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.